Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_02107 and BPUM_2096

See Amino acid alignment / Visit BSNT_02107 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:22:33
# Commandline: needle
#    -asequence dna-align/BSNT_02107___rapA.1.24716.seq
#    -bsequence dna-align/BPUM_2096___rapA3.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_02107___rapA-BPUM_2096___rapA3.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02107___rapA-BPUM_2096___rapA3.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02107___rapA
# 2: BPUM_2096___rapA3
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1429
# Identity:     725/1429 (50.7%)
# Similarity:   725/1429 (50.7%)
# Gaps:         464/1429 (32.5%)
# Score: 1802.5
# 
#
#=======================================

BSNT_02107___      1 ATGAAGCAGACGATTCCGTCCTCTTATGTCGGGCTTAAAATTAATGAATG     50
                     .||||||..|.|.|..|.||..||.|.||.||..|||||||.||.|||||
BPUM_2096___r      1 TTGAAGCTCAAGCTGTCATCGCCTCAGGTTGGAATTAAAATAAACGAATG     50

BSNT_02107___     51 GTATACTCATATCCGGCAG---------TTCCACGTC------GC--TGA     83
                     |||||         |||||         ||.||.|||      ||  .||
BPUM_2096___r     51 GTATA---------GGCAGATTTGCGGATTTCATGTCATGAAAGCAGAGA     91

BSNT_02107___     84 AGCCGAACGGGTCAAGCTCGAAGTAGAAAGAGAAATTGAGGATATGGAAG    133
                     |||.|||  ||.|.||.||| ||.||     ||||||..|||.|||||..
BPUM_2096___r     92 AGCTGAA--GGCCGAGATCG-AGCAG-----GAAATTCTGGAGATGGAGC    133

BSNT_02107___    134 AAGACCAAGATTTGCTGCTGTATTATTCTTTA-------ATGGAGTTCAG    176
                     ||||.|||.|.||||||||||       ||||       |||||.||..|
BPUM_2096___r    134 AAGATCAAAACTTGCTGCTGT-------TTTACCAGCTGATGGATTTTCG    176

BSNT_02107___    177 GCATCGTGTCATGCTGGATTACATT-------------AAGCCT----TT    209
                     .|||...||.|||||.||.||..||             ||||||    | 
BPUM_2096___r    177 CCATAAGGTGATGCTTGAATATTTTGAACCAGCAAAGAAAGCCTCAAAT-    225

BSNT_02107___    210 TGGAGAGGACACGTCGCAGCTAGAGTTTTCAGAATTA--------TTAGA    251
                         ||.||            |||        |||||        .||||
BPUM_2096___r    226 ----GATGA------------AGA--------AATTAAAAACCTGCTAGA    251

BSNT_02107___    252 AGAC-ATCGAAGGGAATCAGT-----AC------AAGCTGACAGGGCTTC    289
                     | || ||||||      ||.|     ||      || |.||||    |.|
BPUM_2096___r    252 A-ACGATCGAA------CATTCGCAAACGAAATTAA-CGGACA----TGC    289

BSNT_02107___    290 TCGAATATTACTTTAATTTTTTTCGAGGAATGTATGAATTTAAGCAGAAG    339
                     |.|||||.||..||.|||||||...||||||||.|||.|||.|.|||.|.
BPUM_2096___r    290 TTGAATACTATGTTCATTTTTTCACAGGAATGTTTGAGTTTGAACAGCAA    339

BSNT_02107___    340 ATGTTTGTCAGTGCCATGATG--TATTATAAACGG----GCAGAAAAGAA    383
                     |..|.|.|.||||||||  ||  ||||    ||.|    ||||||||.||
BPUM_2096___r    340 AACTATTTAAGTGCCAT--TGCCTATT----ACCGTTCAGCAGAAAAAAA    383

BSNT_02107___    384 TCTTGCCCTCGTCTCGGATGATATTGAGAAAGCCGAGTTTGCTTTTAAAA    433
                     .||....|||.|.||.||||||||.||.|.|||.||.|||...||||||.
BPUM_2096___r    384 GCTCAATCTCATATCAGATGATATAGAAAGAGCAGAATTTTACTTTAAAT    433

BSNT_02107___    434 TGGCTGAGATTTTTTACAATTTAAAACAAACCTATGTTTCGATGAGCTAC    483
                     |.||.||.||.|..|||.|..|.|||||||||.|..||||||||..|||.
BPUM_2096___r    434 TAGCCGAAATATACTACCACATGAAACAAACCCACTTTTCGATGCACTAT    483

BSNT_02107___    484 GCCGTTCAGGCATTAGAAACATACCAAATGTATG------AAACGTACAC    527
                     |||.|.||.||.|||||.||.|||      |.||      .|||||||| 
BPUM_2096___r    484 GCCTTGCAAGCGTTAGATACGTAC------TCTGCCTACAGAACGTACA-    526

BSNT_02107___    528 CGTCCGCAGA-----ATCCAATGTGAATTCGTTAT---TGCAGGTAATTA    569
                         |||.||     |||||.||||||||.||.||   ||||   ||.||
BPUM_2096___r    527 ----CGCTGAGAATCATCCACTGTGAATTTGTCATCGGTGCA---AACTA    569

BSNT_02107___    570 TGATGAT-----ATGCAGTATCCAGAAAGAGCATTGCCCCAC-TTAGAAC    613
                     |||||||     ||||  |||   |||...|||||||||.|| |||.||.
BPUM_2096___r    570 TGATGATTTGAAATGC--TAT---GAACATGCATTGCCCTACTTTAAAAA    614

BSNT_02107___    614 TGGCTTTAGATCTTGCA-----AAGAAGGAAGGCAATCCCCGCCTGATCA    658
                     | |||.||.|||..|||     ||     ..||.||.||.||..|.||..
BPUM_2096___r    615 T-GCTCTAAATCGAGCACGCTCAA-----TTGGAAACCCTCGAGTCATAG    658

BSNT_02107___    659 GTTCCGCCCTATATAATCTCGGAAACTGCTATGAGAAAATGGGTGAAC--    706
                     ||||.|||||.|..||..|.||.|||||.|||.|..|||    |||||  
BPUM_2096___r    659 GTTCGGCCCTTTTCAACTTAGGTAACTGTTATTACCAAA----TGAACGA    704

BSNT_02107___    707 ---TGCAAAAGGCAGCCG--------AATACT---TTG-AGAAATCTGTT    741
                        |||..|||..|||||        ||.|||   ||| ||     ||||
BPUM_2096___r    705 CCTTGCGGAAGCAAGCCGTTATCTGAAAGACTCTCTTGAAG-----TGTT    749

BSNT_02107___    742 TCTATTTGCAAGTCGGAAAAGTTCGATAATCTTCCGCAT-----------    780
                     |              ||||||   ||.|||.|..|.|||           
BPUM_2096___r    750 T--------------GAAAAG---GAGAATTTAACCCATCTTAATCGCTC    782

BSNT_02107___    781 TCT--ATCTACTCTTTA-----ACACAAGTTCTGTATAAACAAAA--AAA    821
                     |||  |.|.|||.||||     ||.|||.|.||||.|||||||||  |||
BPUM_2096___r    783 TCTAGACCCACTATTTATGCTCACCCAAATCCTGTTTAAACAAAAACAAA    832

BSNT_02107___    822 TGACGCCGAAGCG-CA-------------AAAAAAGTATCGTGAA-----    852
                     |     .||||.| ||             |||||.||||..||||     
BPUM_2096___r    833 T-----AGAAGAGTCATTAACCCTCTATCAAAAAGGTATTATGAAAGCCT    877

BSNT_02107___    853 --GGATTGGAAATCGCCCGTCAATACAGTGATGAATTATTCGTGGAGCTT    900
                       |.|||.|||                  ||||||.|.|.|.|     ||
BPUM_2096___r    878 GTGAATTAGAA------------------GATGAAATTTACAT-----TT    904

BSNT_02107___    901 -----TTTCAATTTTTACATGCGTTATACGGAAAAAACATTGACACAGA-    944
                          |||||.||.|||.|.||.|||||||         ||||..|||| 
BPUM_2096___r    905 GCAAATTTCAGTTCTTAAAAGCCTTATACG---------TTGATGCAGAA    945

BSNT_02107___    945 --ATCGGTCTCACAC---ACCTTTCAATTTCTTGAAGAACATATGCTGTA    989
                       |.||.||..|.||   ||.||..|..|.||.| ||.|||...||| ||
BPUM_2096___r    946 ATAGCGATCATAGACGATACGTTAGACCTGCTCG-AGGACAAGCGCT-TA    993

BSNT_02107___    990 T--CCTTATATTGAAGAGCTGGCGCATGATGCTGCCCAATTCTATATAGA   1037
                     |  ||..|.|||||.||..||||.|.||||||.||.||   .||| ||.|
BPUM_2096___r    994 TACCCAGACATTGAGGAATTGGCACTTGATGCGGCTCA---TTAT-TACA   1039

BSNT_02107___   1038 A--AAC--GGACAGCCCGAAAAAGCACTTTCA---TTTTATGAGAAAATG   1080
                     |  |.|  ||||.|   .|..|||||....||   ||||||||.|..|.|
BPUM_2096___r   1040 ATGAGCTTGGACTG---TATGAAGCATCGACACGGTTTTATGAAAGGAAG   1086

BSNT_02107___   1081 GTGCACGCACAAA--AACAAATCCAGAGAGGAGATTGTTTATATGAAATC   1128
                     .|.||.|| ||.|  || ||||.||.|..||.|.|..|||||||||||.|
BPUM_2096___r   1087 ATTCAAGC-CATATCAA-AAATTCAAAATGGGGGTCATTTATATGAAAAC   1134

BSNT_02107___   1129 TAA-----------------------------------------------   1131
                     .|.                                               
BPUM_2096___r   1135 GAGTTTGATAGTTCTTTTATTGGCAGCAACTGCAGGATTATCGGTCATGA   1184

BSNT_02107___   1131 --------------------------------------------------   1131
                                                                       
BPUM_2096___r   1185 GTCAGCAACAATCGGAAGAGAGCCATATGGAACTGGCGGGCAGACACCAT   1234

BSNT_02107___   1131 -----------------------------   1131
                                                  
BPUM_2096___r   1235 ACAACAGTGGTGACTATCGTATAAGTTAA   1263


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