Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_02107 and BPUM_2096
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:33
# Commandline: needle
# -asequence dna-align/BSNT_02107___rapA.1.24716.seq
# -bsequence dna-align/BPUM_2096___rapA3.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_02107___rapA-BPUM_2096___rapA3.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_02107___rapA-BPUM_2096___rapA3.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_02107___rapA
# 2: BPUM_2096___rapA3
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1429
# Identity: 725/1429 (50.7%)
# Similarity: 725/1429 (50.7%)
# Gaps: 464/1429 (32.5%)
# Score: 1802.5
#
#
#=======================================
BSNT_02107___ 1 ATGAAGCAGACGATTCCGTCCTCTTATGTCGGGCTTAAAATTAATGAATG 50
.||||||..|.|.|..|.||..||.|.||.||..|||||||.||.|||||
BPUM_2096___r 1 TTGAAGCTCAAGCTGTCATCGCCTCAGGTTGGAATTAAAATAAACGAATG 50
BSNT_02107___ 51 GTATACTCATATCCGGCAG---------TTCCACGTC------GC--TGA 83
||||| ||||| ||.||.||| || .||
BPUM_2096___r 51 GTATA---------GGCAGATTTGCGGATTTCATGTCATGAAAGCAGAGA 91
BSNT_02107___ 84 AGCCGAACGGGTCAAGCTCGAAGTAGAAAGAGAAATTGAGGATATGGAAG 133
|||.||| ||.|.||.||| ||.|| ||||||..|||.|||||..
BPUM_2096___r 92 AGCTGAA--GGCCGAGATCG-AGCAG-----GAAATTCTGGAGATGGAGC 133
BSNT_02107___ 134 AAGACCAAGATTTGCTGCTGTATTATTCTTTA-------ATGGAGTTCAG 176
||||.|||.|.|||||||||| |||| |||||.||..|
BPUM_2096___r 134 AAGATCAAAACTTGCTGCTGT-------TTTACCAGCTGATGGATTTTCG 176
BSNT_02107___ 177 GCATCGTGTCATGCTGGATTACATT-------------AAGCCT----TT 209
.|||...||.|||||.||.||..|| |||||| |
BPUM_2096___r 177 CCATAAGGTGATGCTTGAATATTTTGAACCAGCAAAGAAAGCCTCAAAT- 225
BSNT_02107___ 210 TGGAGAGGACACGTCGCAGCTAGAGTTTTCAGAATTA--------TTAGA 251
||.|| ||| ||||| .||||
BPUM_2096___r 226 ----GATGA------------AGA--------AATTAAAAACCTGCTAGA 251
BSNT_02107___ 252 AGAC-ATCGAAGGGAATCAGT-----AC------AAGCTGACAGGGCTTC 289
| || |||||| ||.| || || |.|||| |.|
BPUM_2096___r 252 A-ACGATCGAA------CATTCGCAAACGAAATTAA-CGGACA----TGC 289
BSNT_02107___ 290 TCGAATATTACTTTAATTTTTTTCGAGGAATGTATGAATTTAAGCAGAAG 339
|.|||||.||..||.|||||||...||||||||.|||.|||.|.|||.|.
BPUM_2096___r 290 TTGAATACTATGTTCATTTTTTCACAGGAATGTTTGAGTTTGAACAGCAA 339
BSNT_02107___ 340 ATGTTTGTCAGTGCCATGATG--TATTATAAACGG----GCAGAAAAGAA 383
|..|.|.|.|||||||| || |||| ||.| ||||||||.||
BPUM_2096___r 340 AACTATTTAAGTGCCAT--TGCCTATT----ACCGTTCAGCAGAAAAAAA 383
BSNT_02107___ 384 TCTTGCCCTCGTCTCGGATGATATTGAGAAAGCCGAGTTTGCTTTTAAAA 433
.||....|||.|.||.||||||||.||.|.|||.||.|||...||||||.
BPUM_2096___r 384 GCTCAATCTCATATCAGATGATATAGAAAGAGCAGAATTTTACTTTAAAT 433
BSNT_02107___ 434 TGGCTGAGATTTTTTACAATTTAAAACAAACCTATGTTTCGATGAGCTAC 483
|.||.||.||.|..|||.|..|.|||||||||.|..||||||||..|||.
BPUM_2096___r 434 TAGCCGAAATATACTACCACATGAAACAAACCCACTTTTCGATGCACTAT 483
BSNT_02107___ 484 GCCGTTCAGGCATTAGAAACATACCAAATGTATG------AAACGTACAC 527
|||.|.||.||.|||||.||.||| |.|| .||||||||
BPUM_2096___r 484 GCCTTGCAAGCGTTAGATACGTAC------TCTGCCTACAGAACGTACA- 526
BSNT_02107___ 528 CGTCCGCAGA-----ATCCAATGTGAATTCGTTAT---TGCAGGTAATTA 569
|||.|| |||||.||||||||.||.|| |||| ||.||
BPUM_2096___r 527 ----CGCTGAGAATCATCCACTGTGAATTTGTCATCGGTGCA---AACTA 569
BSNT_02107___ 570 TGATGAT-----ATGCAGTATCCAGAAAGAGCATTGCCCCAC-TTAGAAC 613
||||||| |||| ||| |||...|||||||||.|| |||.||.
BPUM_2096___r 570 TGATGATTTGAAATGC--TAT---GAACATGCATTGCCCTACTTTAAAAA 614
BSNT_02107___ 614 TGGCTTTAGATCTTGCA-----AAGAAGGAAGGCAATCCCCGCCTGATCA 658
| |||.||.|||..||| || ..||.||.||.||..|.||..
BPUM_2096___r 615 T-GCTCTAAATCGAGCACGCTCAA-----TTGGAAACCCTCGAGTCATAG 658
BSNT_02107___ 659 GTTCCGCCCTATATAATCTCGGAAACTGCTATGAGAAAATGGGTGAAC-- 706
||||.|||||.|..||..|.||.|||||.|||.|..||| |||||
BPUM_2096___r 659 GTTCGGCCCTTTTCAACTTAGGTAACTGTTATTACCAAA----TGAACGA 704
BSNT_02107___ 707 ---TGCAAAAGGCAGCCG--------AATACT---TTG-AGAAATCTGTT 741
|||..|||..||||| ||.||| ||| || ||||
BPUM_2096___r 705 CCTTGCGGAAGCAAGCCGTTATCTGAAAGACTCTCTTGAAG-----TGTT 749
BSNT_02107___ 742 TCTATTTGCAAGTCGGAAAAGTTCGATAATCTTCCGCAT----------- 780
| |||||| ||.|||.|..|.|||
BPUM_2096___r 750 T--------------GAAAAG---GAGAATTTAACCCATCTTAATCGCTC 782
BSNT_02107___ 781 TCT--ATCTACTCTTTA-----ACACAAGTTCTGTATAAACAAAA--AAA 821
||| |.|.|||.|||| ||.|||.|.||||.||||||||| |||
BPUM_2096___r 783 TCTAGACCCACTATTTATGCTCACCCAAATCCTGTTTAAACAAAAACAAA 832
BSNT_02107___ 822 TGACGCCGAAGCG-CA-------------AAAAAAGTATCGTGAA----- 852
| .||||.| || |||||.||||..||||
BPUM_2096___r 833 T-----AGAAGAGTCATTAACCCTCTATCAAAAAGGTATTATGAAAGCCT 877
BSNT_02107___ 853 --GGATTGGAAATCGCCCGTCAATACAGTGATGAATTATTCGTGGAGCTT 900
|.|||.||| ||||||.|.|.|.| ||
BPUM_2096___r 878 GTGAATTAGAA------------------GATGAAATTTACAT-----TT 904
BSNT_02107___ 901 -----TTTCAATTTTTACATGCGTTATACGGAAAAAACATTGACACAGA- 944
|||||.||.|||.|.||.||||||| ||||..||||
BPUM_2096___r 905 GCAAATTTCAGTTCTTAAAAGCCTTATACG---------TTGATGCAGAA 945
BSNT_02107___ 945 --ATCGGTCTCACAC---ACCTTTCAATTTCTTGAAGAACATATGCTGTA 989
|.||.||..|.|| ||.||..|..|.||.| ||.|||...||| ||
BPUM_2096___r 946 ATAGCGATCATAGACGATACGTTAGACCTGCTCG-AGGACAAGCGCT-TA 993
BSNT_02107___ 990 T--CCTTATATTGAAGAGCTGGCGCATGATGCTGCCCAATTCTATATAGA 1037
| ||..|.|||||.||..||||.|.||||||.||.|| .||| ||.|
BPUM_2096___r 994 TACCCAGACATTGAGGAATTGGCACTTGATGCGGCTCA---TTAT-TACA 1039
BSNT_02107___ 1038 A--AAC--GGACAGCCCGAAAAAGCACTTTCA---TTTTATGAGAAAATG 1080
| |.| ||||.| .|..|||||....|| ||||||||.|..|.|
BPUM_2096___r 1040 ATGAGCTTGGACTG---TATGAAGCATCGACACGGTTTTATGAAAGGAAG 1086
BSNT_02107___ 1081 GTGCACGCACAAA--AACAAATCCAGAGAGGAGATTGTTTATATGAAATC 1128
.|.||.|| ||.| || ||||.||.|..||.|.|..|||||||||||.|
BPUM_2096___r 1087 ATTCAAGC-CATATCAA-AAATTCAAAATGGGGGTCATTTATATGAAAAC 1134
BSNT_02107___ 1129 TAA----------------------------------------------- 1131
.|.
BPUM_2096___r 1135 GAGTTTGATAGTTCTTTTATTGGCAGCAACTGCAGGATTATCGGTCATGA 1184
BSNT_02107___ 1131 -------------------------------------------------- 1131
BPUM_2096___r 1185 GTCAGCAACAATCGGAAGAGAGCCATATGGAACTGGCGGGCAGACACCAT 1234
BSNT_02107___ 1131 ----------------------------- 1131
BPUM_2096___r 1235 ACAACAGTGGTGACTATCGTATAAGTTAA 1263
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