Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03511 and BPUM_2090

See Amino acid alignment / Visit BSNT_03511 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:02
# Commandline: needle
#    -asequence dna-align/BSNT_03511___nudF.1.24716.seq
#    -bsequence dna-align/BPUM_2090___nudF.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03511___nudF-BPUM_2090___nudF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03511___nudF-BPUM_2090___nudF.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03511___nudF
# 2: BPUM_2090___nudF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 580
# Identity:     414/580 (71.4%)
# Similarity:   414/580 (71.4%)
# Gaps:          44/580 ( 7.6%)
# Score: 1360.5
# 
#
#=======================================

BSNT_03511___      1 ATGAAATCATTAGAAGAAAAAACA--ATTG-CCAAAGAACAGATCTTTT-     46
                     .||||....||.||||||||||||  ||.| |.||||||      ||.| 
BPUM_2090___n      1 TTGAAGGACTTTGAAGAAAAAACATTATCGACTAAAGAA------TTATA     44

BSNT_03511___     47 ---CGGGTAAAGTCATTGATCTTTATGTCGAGGATGTAGAGCTGCCAAAC     93
                        | ||.|||.||||||||.|...|.|.||.||||||||..||||||||
BPUM_2090___n     45 CAAC-GGAAAAATCATTGATTTGGTTCTTGAAGATGTAGAATTGCCAAAC     93

BSNT_03511___     94 GGCAAAGCCA--GTAAACGTGAAATTGTGAAACACCCTGGAGCTGTAGCG    141
                     ||.|||  ||  |.|||||||||||..|.|||||.|||||.||.|||||.
BPUM_2090___n     94 GGAAAA--CAAGGCAAACGTGAAATCATCAAACATCCTGGTGCAGTAGCC    141

BSNT_03511___    142 GTACTAGCCGTC--ACAGATGAAGGGAAAATCATCATGGTCAAACAATTC    189
                     ||..|.||  ||  |||||.|||...|||||||||.|||||||.||||.|
BPUM_2090___n    142 GTCATTGC--TCGGACAGACGAAAATAAAATCATCTTGGTCAAGCAATAC    189

BSNT_03511___    190 CGTAAGCCGCTTGAGCGGACGATCGTTGAAATTCCGGCCGGTAAGCTTGA    239
                     |||||..|.||.|||.|..|.|||||||||||||||||.|||||..|.||
BPUM_2090___n    190 CGTAAAGCACTAGAGAGAGCCATCGTTGAAATTCCGGCTGGTAAATTAGA    239

BSNT_03511___    240 AAAAGGTGAGGAGCCGGAGTATACGGCACTTCGGGAACTTGAAGAGGAAA    289
                     ...|||.||.|||||.|...||||.|||||.||.|||.|.|||||.||||
BPUM_2090___n    240 GCCAGGGGAAGAGCCAGCACATACAGCACTGCGAGAATTAGAAGAAGAAA    289

BSNT_03511___    290 CCGGTTATACAGCA--AAAAAACTGACAAAA-ATAACTGCGTTTTATACA    336
                     |.||  |||||.||  .|.||.|| .||||| .|.||.||.||||||||.
BPUM_2090___n    290 CAGG--ATACACCACCCAGAAGCT-TCAAAAGCTGACGGCTTTTTATACT    336

BSNT_03511___    337 TCACCCGGATTTGCAGATGAGATCGTTCACGTTTTTCTTGCTGAGGAGCT    386
                     |||||.||.|||||||||||.|||||.|||.|.|.||||||.||..||||
BPUM_2090___n    337 TCACCGGGTTTTGCAGATGAAATCGTCCACATGTATCTTGCAGATCAGCT    386

BSNT_03511___    387 --TTCTGTGCTTGAAGAAAAACGGGAGCTTGATGAGGACGAGTTTGTTGA    434
                       |||  ..||||||||||||.|.|||||.|||||.|||||.|||||.||
BPUM_2090___n    387 AATTC--CACTTGAAGAAAAAAGAGAGCTGGATGAAGACGAATTTGTGGA    434

BSNT_03511___    435 AGTGATGGAGGTGACGCTTGAAGATGCGCTAAAGCTGGTTGAATCGCGTG    484
                     |||||||||.||..|..|.|||||.||..|..|.||..|||||..||   
BPUM_2090___n    435 AGTGATGGAAGTTTCATTAGAAGAAGCCTTGCACCTCATTGAAAAGC---    481

BSNT_03511___    485 AAG----TATATGATGCTAAAACAGCCTACGCGATTCAGTATCTT-CAAC    529
                      ||    |.||||||||.|||||||||||.||.|||||||| ||| ||||
BPUM_2090___n    482 -AGCATATTTATGATGCAAAAACAGCCTATGCCATTCAGTA-CTTACAAC    529

BSNT_03511___    530 TGAAAGAAGCGCTCCAAG-CACAAAAATGA    558
                     ||.||||.|..|| .||| ||..|||||||
BPUM_2090___n    530 TGCAAGAGGTACT-TAAGTCAACAAAATGA    558


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