Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03504 and BPUM_2087

See Amino acid alignment / Visit BSNT_03504 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:01
# Commandline: needle
#    -asequence dna-align/BSNT_03504___yqkK.1.24716.seq
#    -bsequence dna-align/BPUM_2087___yqkK.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03504___yqkK-BPUM_2087___yqkK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03504___yqkK-BPUM_2087___yqkK.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03504___yqkK
# 2: BPUM_2087___yqkK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 267
# Identity:     141/267 (52.8%)
# Similarity:   141/267 (52.8%)
# Gaps:          96/267 (36.0%)
# Score: 403.0
# 
#
#=======================================

BSNT_03504___      1 ATGGCAAAAAGCCAAGCGAAAAAGAAGCGGGAGCATCGATTGA-------     43
                     ||||.|||||||.|.||.||.||.||.||.||.||||  ||||       
BPUM_2087___y      1 ATGGGAAAAAGCAATGCAAAGAAAAAACGAGAACATC--TTGAAAGGCAG     48

BSNT_03504___     44 -------GAAACGGCGGACGTGACGTCTTATTATCAAGAGGCAGCA----     82
                            ||||| .||||           |||.||.|||||.|.||    
BPUM_2087___y     49 CACAGCCGAAAC-CCGGA-----------ATTGTCGAGAGGAAACATGCC     86

BSNT_03504___     83 -CACCATCTTTCAGCACACATGAAAGATTAACAAAAAGCAAAA----AAG    127
                      |||     ||.||.||||||||||||...||||||| |||||    |||
BPUM_2087___y     87 GCAC-----TTTAGTACACATGAAAGAAAGACAAAAA-CAAAACAAGAAG    130

BSNT_03504___    128 ---------AGATTTTGAATAAACGGAAGCATAA------GAATCCTTAT    162
                              |.||..|||      |.||.|||||      ||||.|||||
BPUM_2087___y    131 CCTTGCAGCACATGATGA------GAAAACATAAAAGAAGGAATGCTTAT    174

BSNT_03504___    163 GATCA-TA-CAGCAGTTGATGATAAGGAT-----------TTTTTTGTGC    199
                     ||||| || ||  ||..|||.|||||.||           |||||||||.
BPUM_2087___y    175 GATCACTATCA--AGAGGATCATAAGCATTTTTATTTTGCTTTTTTGTGA    222

BSNT_03504___    200 CCCAAAAAGCCGCCTAG    216
                                      
BPUM_2087___y    222 -----------------    222


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