Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03502 and BPUM_2085
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:01
# Commandline: needle
# -asequence dna-align/BSNT_03502___spoIIM.1.24716.seq
# -bsequence dna-align/BPUM_2085___spoIIM.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03502___spoIIM-BPUM_2085___spoIIM.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03502___spoIIM-BPUM_2085___spoIIM.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03502___spoIIM
# 2: BPUM_2085___spoIIM
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 661
# Identity: 469/661 (71.0%)
# Similarity: 469/661 (71.0%)
# Gaps: 29/661 ( 4.4%)
# Score: 1526.5
#
#
#=======================================
BSNT_03502___ 1 ATGCGAAAAATCTCTTATAAGG-ACATGTTTCTCAGGCATGTCAAAGATC 49
|||||.||||..||||..|||| ||||.||..||| |||.||.|||||.|
BPUM_2085___s 1 ATGCGGAAAAAGTCTTGGAAGGAACATCTTCTTCA-GCACGTAAAAGACC 49
BSNT_03502___ 50 ATCTCTCTCTTTATATATTTGTGTCAGTGCTGTTTTTCATGGGTGTCATC 99
||||.||..|||||.|||||||.||.||.||.|||||.|||||.||.|||
BPUM_2085___s 50 ATCTATCGATTTATTTATTTGTCTCTGTACTTTTTTTAATGGGCGTAATC 99
BSNT_03502___ 100 TTTGGCGCGATTATTGTCAACAGTATGACCATCAGCCAGAAAGAAGATTT 149
|||||.||.|||||.|||||.||||||||.||.||.||.|||||.|||||
BPUM_2085___s 100 TTTGGAGCCATTATCGTCAATAGTATGACAATAAGTCAAAAAGAGGATTT 149
BSNT_03502___ 150 ATACTACTACTTAAGTCAATTTTTTGGACAGCTTTCGGATG-GAAAACAG 198
||.|||.||.||||.||||||||||||.|||||..|..||| ||||.||
BPUM_2085___s 150 ATTCTATTATTTAAATCAATTTTTTGGTCAGCTGACAAATGAGAAAGCA- 198
BSNT_03502___ 199 GCAAGTTCAGCTGATATGTTTGGGCAAAGTATCTTTCATAATGCAAAGTA 248
|||...|||...||.||||||..||||||..|.||.|||.||...||.||
BPUM_2085___s 199 GCAGAATCAAAAGAAATGTTTTTGCAAAGCTTTTTGCATCATATGAAATA 248
BSNT_03502___ 249 TTTAGGCCTGATGTGGATACTGGGAATTTCCGTCATTGGAATGCCGATTA 298
||||||.||.|||||||||||.||.||.||..|||||||..|||||.|.|
BPUM_2085___s 249 TTTAGGTCTTATGTGGATACTAGGGATATCTATCATTGGCCTGCCGCTCA 298
BSNT_03502___ 299 T-TTTCATCATGATCTTTCTGAAAGGGATCGTCGTCGGCTTTACTGTCGG 347
| |||| |||||||||||.|.|||||.||.||.||.||.|||||.||.||
BPUM_2085___s 299 TCTTTC-TCATGATCTTTTTAAAAGGAATTGTTGTGGGGTTTACAGTTGG 347
BSNT_03502___ 348 GTTCCTAGTCAATCAGATGGGAGTAAGCGGGTTTTTCCTATCTTTTGTCT 397
.||..||||.|||||.|||||..|.||.||.||.|||||.||.||.||.|
BPUM_2085___s 348 TTTTTTAGTAAATCAAATGGGGCTGAGTGGTTTCTTCCTTTCGTTCGTAT 397
BSNT_03502___ 398 CCGTTTTGCCGCAAAATGTGCTGCTGATTCCGGCTTATCTCA-TTATGGG 446
|.|||.|.||||||||..|..||||.|||||.||.|| ||.| |.||.||
BPUM_2085___s 398 CAGTTCTTCCGCAAAACATATTGCTTATTCCAGCCTA-CTTAGTGATTGG 446
BSNT_03502___ 447 CACATGTGCAATTGCGTTTTCTTTAAAGTTAATCAGACAGCTGTTCGTGA 496
.|||||.||.|||||||||||..|...|.|.||..|.||.||||||.|||
BPUM_2085___s 447 GACATGCGCGATTGCGTTTTCCATCCGGCTCATTGGGCAACTGTTCATGA 496
BSNT_03502___ 497 AACGAAGCCTGCA-TGACGCGCCGATTCAATGGTTCGGGCGGTATGCCTT 545
|| .||.||..|| |.|.||.||..||||.|||||||..||.|||||.|.
BPUM_2085___s 497 AA-AAAACCATCAGTCAAGCACCTGTTCAGTGGTTCGCCCGTTATGCATC 545
BSNT_03502___ 546 TGTGCTGCTGGTCATTCTGTTTTTAGC----GCTG--ATCTCATCTCTCT 589
|||.||.||| .||.||||||| |||| .|.||.||..|.|
BPUM_2085___s 546 TGTTCTACTG------ATGATTTTAGCACTTGCTGCACTTTCGTCCTTTT 589
BSNT_03502___ 590 TTGAAGCATACTTATCTCCT--GTTTTAATGGAAAAGCTTACATCTAGAC 637
|||||.|.||| .|||||| .|..|.|||.|||||||..||..|...|
BPUM_2085___s 590 TTGAATCGTAC--GTCTCCTTCATGCTCATGAAAAAGCTGGCAGGTGTTC 637
BSNT_03502___ 638 TTTT---TTAA 645
|||| .|||
BPUM_2085___s 638 TTTTCACATAA 648
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