Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03489 and BPUM_2076
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:00
# Commandline: needle
# -asequence dna-align/BSNT_03489___sigF.1.24716.seq
# -bsequence dna-align/BPUM_2076___sigF.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03489___sigF-BPUM_2076___sigF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03489___sigF-BPUM_2076___sigF.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03489___sigF
# 2: BPUM_2076___sigF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 778
# Identity: 600/778 (77.1%)
# Similarity: 600/778 (77.1%)
# Gaps: 20/778 ( 2.6%)
# Score: 2263.0
#
#
#=======================================
BSNT_03489___ 1 ATGGATGTGGAGGTTAAGAAAAACG---GC-AAAAACGCTCAGCTG--AA 44
|||||||||||||| |||||.| || |||||.||.|||||| ||
BPUM_2076___s 1 ATGGATGTGGAGGT----AAAAAAGCAAGCAAAAAAAGCCCAGCTGTCAA 46
BSNT_03489___ 45 GGATCATGAAGTAAAGGAATTAATCAAACAAAGCCAAAATGGCGACCAGC 94
||.|||||||.||.||..|.||||||.||||||||.|.||.||.||||
BPUM_2076___s 47 --ATGATGAAGTCAAAGAGCTCATCAAAAAAAGCCAAGACGGTGATCAGC 94
BSNT_03489___ 95 AGGCAAGAGACCTCCTCATAGAAAAAAACATGCGTCTTGTTTGGTCTGTC 144
|.|||||||||||||||.||||||||||||||||||||||||||||.||.
BPUM_2076___s 95 AAGCAAGAGACCTCCTCGTAGAAAAAAACATGCGTCTTGTTTGGTCCGTT 144
BSNT_03489___ 145 GTACAGCGGTTTTTAAACAGAGGATATGAGCCTGACGATCTCTTCCAGAT 194
||.|||||.||||||||.|||||||||||.||.||.|||.|.||.||.||
BPUM_2076___s 145 GTTCAGCGCTTTTTAAATAGAGGATATGAACCAGATGATTTGTTTCAAAT 194
BSNT_03489___ 195 CGGCTGCATCGGGCTGTTAAAATCTGTTGACAAATTTGATTTAACCTATG 244
.|||||.||.||..||.|||||||.|||||.|||||||||||..|.||||
BPUM_2076___s 195 TGGCTGTATTGGATTGCTAAAATCCGTTGATAAATTTGATTTGTCATATG 244
BSNT_03489___ 245 ATGTGCGTTTTTCAACGTATGCAGTGCCGATGATTATCGGAGAAATCCAA 294
|||||...|||||.||.|||||.||.||.||||||||.||.||||||||.
BPUM_2076___s 245 ATGTGAAGTTTTCGACCTATGCTGTTCCAATGATTATTGGTGAAATCCAG 294
BSNT_03489___ 295 CGATTTATCCGTGATGACGGAACCGT-AAAGGTATCA--CGGTCATTAAA 341
|||||.||.||.|||||.|||||.|| |||| ||| ||||||.||||
BPUM_2076___s 295 CGATTCATTCGGGATGATGGAACAGTCAAAG---TCAGCCGGTCACTAAA 341
BSNT_03489___ 342 AGAGCTTGGAAACAAAATCCGGCGCGCGAAG-GATGAGCTTTCGAAAACA 390
.||.||.|||||.|||||||||||.|| ||| |||||..|.||.||..|.
BPUM_2076___s 342 GGAACTCGGAAATAAAATCCGGCGGGC-AAGAGATGAATTGTCTAAGTCT 390
BSNT_03489___ 391 CTGGGCAGAGTGCCGACGGTGCAGGAGATCGCTGACCATTTGGAGATTGA 440
|..||.|||.|||||||.||.|||||.||.||.||..||.|.||.||...
BPUM_2076___s 391 CATGGAAGAATGCCGACCGTCCAGGAAATAGCCGAATATCTAGATATCAC 440
BSNT_03489___ 441 AGCTGAGGATGTTGTACTGGCCCAAGAGGCGGTAAGGGCTCCATCTTCGA 490
|.|.||||||||.||.||.||||||||.|||||..|..|.||.||.||||
BPUM_2076___s 441 ACCAGAGGATGTCGTCCTCGCCCAAGAAGCGGTCCGAACGCCGTCGTCGA 490
BSNT_03489___ 491 TTCACGAAACCGTTTATGAAAATGACGGAGATCCGATTACCCTGCTTGAT 540
||||.|||||.||||||||||||||.||.||.||.|||||..|.||.|||
BPUM_2076___s 491 TTCATGAAACGGTTTATGAAAATGATGGGGACCCCATTACATTACTCGAT 540
BSNT_03489___ 541 CAAATCGCTGACAACTCAGAAGAAAAATGGTTTGACAAAATTGCGCTGAA 590
|||||.|||||..|.||||||||||.|||||||||.|||||.||||||||
BPUM_2076___s 541 CAAATTGCTGATCATTCAGAAGAAAGATGGTTTGATAAAATCGCGCTGAA 590
BSNT_03489___ 591 AGAAGCAATCAGCGATTTGGAGGAAAGGGAAAAACTAATCGTCTATCTCA 640
||||||.||||..||.||.||.|||.|.||||||||.||.||.||..|.|
BPUM_2076___s 591 AGAAGCGATCAAGGAATTAGAAGAACGAGAAAAACTCATTGTGTACTTAA 640
BSNT_03489___ 641 GATATTATAAAGACCAGACACAGTCCGAGGTGGCTGAGCGGCTCGGGATC 690
|.||||||||||||||.|||||.||.|||||.||.|||.|.|||||.||.
BPUM_2076___s 641 GGTATTATAAAGACCAAACACAATCTGAGGTAGCAGAGAGACTCGGCATT 690
BSNT_03489___ 691 TCTCAGGTGCAGGTTTCCAGGCTTGAAAAGAAAATATTAAAACAGATCAA 740
||.||.||.||.||.||..||||.|||||||||||.||||||||.|||.|
BPUM_2076___s 691 TCACAAGTACAAGTCTCGCGGCTCGAAAAGAAAATTTTAAAACAAATCCA 740
BSNT_03489___ 741 GGTTCAAATGGATCATACGGATGGCTAG 768
..|.|||||||||||.|..||..|||||
BPUM_2076___s 741 AATGCAAATGGATCAAAAAGAGAGCTAG 768
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