Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03487 and BPUM_2075

See Amino acid alignment / Visit BSNT_03487 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:24:00
# Commandline: needle
#    -asequence dna-align/BSNT_03487___spoVAA.1.24716.seq
#    -bsequence dna-align/BPUM_2075___spoVAA.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03487___spoVAA-BPUM_2075___spoVAA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03487___spoVAA-BPUM_2075___spoVAA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03487___spoVAA
# 2: BPUM_2075___spoVAA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 686
# Identity:     435/686 (63.4%)
# Similarity:   435/686 (63.4%)
# Gaps:         127/686 (18.5%)
# Score: 1360.5
# 
#
#=======================================

BSNT_03487___      1 ATGATGGAACG-ACGAATATTTATCCGGCTTCGCCACCG----------G     39
                        |||| ||| ||.|||.|||.|.|||||.|||||.||          |
BPUM_2075___s      1 ---ATGG-ACGAACAAATCTTTCTTCGGCTGCGCCATCGCATTAAAACCG     46

BSNT_03487___     40 GTGCTG----GCACATCCAGGGGATATTATTACCGTTGGAGATGCCGCGC     85
                     ||..||    ||.|||          |||||    |.|.||||..|||.|
BPUM_2075___s     47 GTAATGATCAGCTCAT----------TTATT----TAGAAGATATCGCCC     82

BSNT_03487___     86 AAAT------AGAAGGGCAGCTTCAGCTGAAAAAGAAACTTTCGGC--TA    127
                     ||||      .||.|   ||.||  ||||.|.|| ||.|||  .||  .|
BPUM_2075___s     83 AAATCACTGGTGATG---AGTTT--GCTGTACAA-AAGCTT--AGCAAGA    124

BSNT_03487___    128 TGCCGCTTTATCAGGTGAGCGAAAAAGATAAAAA-TATCGTAA-------    169
                     |||||.|.|||||.||.||         |||||| .|||||.|       
BPUM_2075___s    125 TGCCGATATATCATGTCAG---------TAAAAAGGATCGTCACATTGCT    165

BSNT_03487___    170 -TTCTGGATATCATACAAGTCCTCAGA-----------------GCCATT    201
                      ||||.||||||||.||.||..|||.|                 ||||..
BPUM_2075___s    166 GTTCTTGATATCATGCATGTGGTCAAAACGATCAAAAAAACATGGCCAGC    215

BSNT_03487___    202 CATTTACAAGATCCGACACTTGATGTTCAAACCGTAGGCGGAGCAGAAAC    251
                     |||          |||||       ||||||||||.||.||..|.|||.|
BPUM_2075___s    216 CAT----------CGACA-------TTCAAACCGTCGGTGGCACTGAAGC    248

BSNT_03487___    252 CATTGTTGAAATTCAATA---TCGAAAGCGAAATTTATCAACGGTTCTAT    298
                     ||||||||||||| .|||   .|.||.||.|..|||.||  |.|||.|||
BPUM_2075___s    249 CATTGTTGAAATT-GATACAGGCAAACGCCAGCTTTCTC--CTGTTTTAT    295

BSNT_03487___    299 TTATCGGT--GTCTGGCTGCTTCTGTTTATT-------GGATCGTGTCTT    339
                     ||.|  ||  ||.|||||       ||||||       |||.||...|||
BPUM_2075___s    296 TTGT--GTTAGTGTGGCT-------TTTATTATTTGTCGGAGCGGCGCTT    336

BSNT_03487___    340 GCCATCATGAACTTTCATGAGGATGTAAGCATGAGAGAT-GTTCATATCG    388
                     |||||.|||||.||.||.||||||||.||.|||.| |.| |||||||||.
BPUM_2075___s    337 GCCATTATGAATTTCCACGAGGATGTCAGTATGCG-GCTCGTTCATATCC    385

BSNT_03487___    389 CACTATATGAAATCATAACCGGAGAGAGGAATGACTATCCATATTTGCTT    438
                     ..|||||||||||.||.||.|||.|.|.|..|||..||||.|||||.||.
BPUM_2075___s    386 GTCTATATGAAATGATCACAGGAAAAACGGTTGAGCATCCTTATTTACTG    435

BSNT_03487___    439 CAAATCCCATACAGCATCGGTTTGGGACTGGGGATGATCGTGTTTTTTAA    488
                     |||||.|||||.|||.||||..|.|||.|.||.|||||..|.|||||.||
BPUM_2075___s    436 CAAATTCCATATAGCTTCGGACTAGGATTTGGCATGATTTTATTTTTCAA    485

BSNT_03487___    489 CCACATATTTAAAAAGCGCCTAAATGAAGAGCCCAGCCCGCTGGAGGTTG    538
                     .||..|||||||||||||..||||||||||.||.||.|||||.||.||.|
BPUM_2075___s    486 TCATGTATTTAAAAAGCGTTTAAATGAAGAACCAAGTCCGCTCGAAGTGG    535

BSNT_03487___    539 AGATGTTTAACTATCAGCTTGATCTCGATCAATATGTGGCCATGCATGAG    588
                     ||||||||||.||||||||.|||||||||||.|||||.|||.|..|.||.
BPUM_2075___s    536 AGATGTTTAAATATCAGCTCGATCTCGATCATTATGTCGCCCTTAAAGAA    585

BSNT_03487___    589 AATCAAGAAACCATAAAGGATCTGCATGATCGTTAG    624
                     |||.||||.||.||.||.|||.|.||||||||.||.
BPUM_2075___s    586 AATAAAGAGACAATGAAAGATATCCATGATCGGTAA    621


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