Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03487 and BPUM_2075
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:00
# Commandline: needle
# -asequence dna-align/BSNT_03487___spoVAA.1.24716.seq
# -bsequence dna-align/BPUM_2075___spoVAA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03487___spoVAA-BPUM_2075___spoVAA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03487___spoVAA-BPUM_2075___spoVAA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03487___spoVAA
# 2: BPUM_2075___spoVAA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 686
# Identity: 435/686 (63.4%)
# Similarity: 435/686 (63.4%)
# Gaps: 127/686 (18.5%)
# Score: 1360.5
#
#
#=======================================
BSNT_03487___ 1 ATGATGGAACG-ACGAATATTTATCCGGCTTCGCCACCG----------G 39
|||| ||| ||.|||.|||.|.|||||.|||||.|| |
BPUM_2075___s 1 ---ATGG-ACGAACAAATCTTTCTTCGGCTGCGCCATCGCATTAAAACCG 46
BSNT_03487___ 40 GTGCTG----GCACATCCAGGGGATATTATTACCGTTGGAGATGCCGCGC 85
||..|| ||.||| ||||| |.|.||||..|||.|
BPUM_2075___s 47 GTAATGATCAGCTCAT----------TTATT----TAGAAGATATCGCCC 82
BSNT_03487___ 86 AAAT------AGAAGGGCAGCTTCAGCTGAAAAAGAAACTTTCGGC--TA 127
|||| .||.| ||.|| ||||.|.|| ||.||| .|| .|
BPUM_2075___s 83 AAATCACTGGTGATG---AGTTT--GCTGTACAA-AAGCTT--AGCAAGA 124
BSNT_03487___ 128 TGCCGCTTTATCAGGTGAGCGAAAAAGATAAAAA-TATCGTAA------- 169
|||||.|.|||||.||.|| |||||| .|||||.|
BPUM_2075___s 125 TGCCGATATATCATGTCAG---------TAAAAAGGATCGTCACATTGCT 165
BSNT_03487___ 170 -TTCTGGATATCATACAAGTCCTCAGA-----------------GCCATT 201
||||.||||||||.||.||..|||.| ||||..
BPUM_2075___s 166 GTTCTTGATATCATGCATGTGGTCAAAACGATCAAAAAAACATGGCCAGC 215
BSNT_03487___ 202 CATTTACAAGATCCGACACTTGATGTTCAAACCGTAGGCGGAGCAGAAAC 251
||| ||||| ||||||||||.||.||..|.|||.|
BPUM_2075___s 216 CAT----------CGACA-------TTCAAACCGTCGGTGGCACTGAAGC 248
BSNT_03487___ 252 CATTGTTGAAATTCAATA---TCGAAAGCGAAATTTATCAACGGTTCTAT 298
||||||||||||| .||| .|.||.||.|..|||.|| |.|||.|||
BPUM_2075___s 249 CATTGTTGAAATT-GATACAGGCAAACGCCAGCTTTCTC--CTGTTTTAT 295
BSNT_03487___ 299 TTATCGGT--GTCTGGCTGCTTCTGTTTATT-------GGATCGTGTCTT 339
||.| || ||.||||| |||||| |||.||...|||
BPUM_2075___s 296 TTGT--GTTAGTGTGGCT-------TTTATTATTTGTCGGAGCGGCGCTT 336
BSNT_03487___ 340 GCCATCATGAACTTTCATGAGGATGTAAGCATGAGAGAT-GTTCATATCG 388
|||||.|||||.||.||.||||||||.||.|||.| |.| |||||||||.
BPUM_2075___s 337 GCCATTATGAATTTCCACGAGGATGTCAGTATGCG-GCTCGTTCATATCC 385
BSNT_03487___ 389 CACTATATGAAATCATAACCGGAGAGAGGAATGACTATCCATATTTGCTT 438
..|||||||||||.||.||.|||.|.|.|..|||..||||.|||||.||.
BPUM_2075___s 386 GTCTATATGAAATGATCACAGGAAAAACGGTTGAGCATCCTTATTTACTG 435
BSNT_03487___ 439 CAAATCCCATACAGCATCGGTTTGGGACTGGGGATGATCGTGTTTTTTAA 488
|||||.|||||.|||.||||..|.|||.|.||.|||||..|.|||||.||
BPUM_2075___s 436 CAAATTCCATATAGCTTCGGACTAGGATTTGGCATGATTTTATTTTTCAA 485
BSNT_03487___ 489 CCACATATTTAAAAAGCGCCTAAATGAAGAGCCCAGCCCGCTGGAGGTTG 538
.||..|||||||||||||..||||||||||.||.||.|||||.||.||.|
BPUM_2075___s 486 TCATGTATTTAAAAAGCGTTTAAATGAAGAACCAAGTCCGCTCGAAGTGG 535
BSNT_03487___ 539 AGATGTTTAACTATCAGCTTGATCTCGATCAATATGTGGCCATGCATGAG 588
||||||||||.||||||||.|||||||||||.|||||.|||.|..|.||.
BPUM_2075___s 536 AGATGTTTAAATATCAGCTCGATCTCGATCATTATGTCGCCCTTAAAGAA 585
BSNT_03487___ 589 AATCAAGAAACCATAAAGGATCTGCATGATCGTTAG 624
|||.||||.||.||.||.|||.|.||||||||.||.
BPUM_2075___s 586 AATAAAGAGACAATGAAAGATATCCATGATCGGTAA 621
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