Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03486 and BPUM_2074
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:00
# Commandline: needle
# -asequence dna-align/BSNT_03486___spoVAB.1.24716.seq
# -bsequence dna-align/BPUM_2074___spoVAB.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03486___spoVAB-BPUM_2074___spoVAB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03486___spoVAB-BPUM_2074___spoVAB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03486___spoVAB
# 2: BPUM_2074___spoVAB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 456
# Identity: 288/456 (63.2%)
# Similarity: 288/456 (63.2%)
# Gaps: 69/456 (15.1%)
# Score: 810.0
#
#
#=======================================
BSNT_03486___ 1 ATGATC-GTTAGTGTATTGTT----CATTATTTTTGTCGGGCTCGGCGGA 45
|||||| ||.||||..||.|| |.||| ||.||.||.|||||.
BPUM_2074___s 1 ATGATCGGTAAGTGGCTTTTTGTCGCGTTA-----GTTGGACTTGGCGGC 45
BSNT_03486___ 46 GGCATAACGGTGGGGGC-GGGTTTCGTTGCTTTTTTAACCGTAATGGGAA 94
||..|||||||.||.|| |||||| ||.||.|||.|..|.||..|.||.|
BPUM_2074___s 46 GGTTTAACGGTAGGAGCAGGGTTT-GTGGCATTTCTTGCGGTGCTAGGTA 94
BSNT_03486___ 95 TCATTCCGCGGCTGATGCAGCTCACCAAAA--CAATGAGATTTGTTCAGG 142
||||.||.||..|.|||||.||.||.|||| ||| .|.||..|.||.|
BPUM_2074___s 95 TCATCCCTCGTTTAATGCAACTAACGAAAACGCAA--CGCTTCATACAAG 142
BSNT_03486___ 143 CTTATGAAGCGGCTGTCATTCTTGGCGCGGT--TTGCGGGGGATGGGAGA 190
..||.||.||.|||||||||...|||||||| || ||.||.||||..|
BPUM_2074___s 143 GATACGAGGCAGCTGTCATTACCGGCGCGGTCGTT--GGTGGCTGGGCAA 190
BSNT_03486___ 191 CGCTTCATATGAA-------TCATCTTTATCTAACAAAATGGATAGCTGT 233
| ||| || .|||.|..|||||.|.||||||.| |||
BPUM_2074___s 191 C-CTT------AAGCGAGGTGCATTTGCATCTATCCAAATGGCT---TGT 230
BSNT_03486___ 234 G---CCGGTCGGGCTT----CTGGCAGGTTTGTTCGTCGGGATGCTAGCG 276
| |||.||||.||| |||||| |.||||||||.|||||.||.
BPUM_2074___s 231 GCTCCCGATCGGTCTTTTAGCTGGCA----TTTTCGTCGGAATGCTTGCA 276
BSNT_03486___ 277 GCTGCTCTTACAGAAGTTTTAAATGTCCTGCCGATTTTGGCGAAACGAAT 326
|||||.||.||.|||||.||||||||.||.||.||.||..|||||.||||
BPUM_2074___s 277 GCTGCGCTGACTGAAGTATTAAATGTACTTCCTATATTAACGAAAAGAAT 326
BSNT_03486___ 327 CGGGCTCAGAA------GTAAAATCATTATTTTATTAATGGCCATCGTGA 370
.| ||| |.|||||.|||.|..|..|.||||||||.||..
BPUM_2074___s 327 TG------GAATGGACGGGAAAATTATTTTGCTTCTCATGGCCATTGTCT 370
BSNT_03486___ 371 TTGGGAAAATCGCGGGATCTTTATTTCACTGGCTGTACTTTATTGACCAT 420
|.||.|||.|....||.||..||||.||.|||||| .||||| ||
BPUM_2074___s 371 TAGGCAAAGTATTTGGTTCACTATTCCATTGGCTG--ATTTAT-----AT 413
BSNT_03486___ 421 TCATAA 426
.|||
BPUM_2074___s 414 --CTAA 417
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