Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03483 and BPUM_2072
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:24:00
# Commandline: needle
# -asequence dna-align/BSNT_03483___spoVAD.1.24716.seq
# -bsequence dna-align/BPUM_2072___spoVAD.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03483___spoVAD-BPUM_2072___spoVAD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03483___spoVAD-BPUM_2072___spoVAD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03483___spoVAD
# 2: BPUM_2072___spoVAD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1036
# Identity: 773/1036 (74.6%)
# Similarity: 773/1036 (74.6%)
# Gaps: 38/1036 ( 3.7%)
# Score: 2709.0
#
#
#=======================================
BSNT_03483___ 1 ATGAAATTAACAGGAAAGCAAACCTGGGTATTTGAACATCCCATATTT-- 48
.|||||.|||||||.||.|||.|.|||||.|||||.|| |.|..|||
BPUM_2072___s 1 GTGAAACTAACAGGTAAACAATCTTGGGTGTTTGAGCA--CAAGCTTTAC 48
BSNT_03483___ 49 GTCAACTCAGCGGGAACGGCAGCAGGACCAAAGGAAAAAGACGGACCGCT 98
|||||..|||.||||||.||.||||||||.||.||||||||.||||||.|
BPUM_2072___s 49 GTCAATGCAGAGGGAACAGCTGCAGGACCGAAAGAAAAAGAAGGACCGAT 98
BSNT_03483___ 99 CGGCTC-TTTATTTGATAAAACCTATGACGAAATGCATTGTAATCAAAAA 147
.|| || ||||.||||||||||.||.||.||||||||||||.|||||||.
BPUM_2072___s 99 TGG-TCATTTAATTGATAAAACGTACGATGAAATGCATTGTGATCAAAAG 147
BSNT_03483___ 148 AGCTGGGAAATGGCGGAACGGCAGCTGATGGAAGACGCTGTTAATGTTGC 197
|.||||||||||||.|||.|..|.||.|||||||||||..| ||...|.
BPUM_2072___s 148 AACTGGGAAATGGCTGAAAGAAAACTCATGGAAGACGCGAT--ATCCAGT 195
BSNT_03483___ 198 GCT---TCAAAAAAACAATCTGACAAAAGA-TGATATTGACCTATTGCTG 243
||| ||||||..| |||.|| |||||.| .||||||||.|||||.||.
BPUM_2072___s 196 GCTTTATCAAAAGCA-AATTTG-CAAAAAAGCGATATTGATCTATTACTT 243
BSNT_03483___ 244 GCAGGCGACTTGCTGAACCAAAACGTGACGGCTAACTATGTGGCAAGACA 293
|||||.||.||.||.||.||||||||.||.||.|||||||||||||||.|
BPUM_2072___s 244 GCAGGAGATTTACTCAATCAAAACGTCACAGCAAACTATGTGGCAAGAGA 293
BSNT_03483___ 294 CTTGAAAATCCCATTTCTTTGTATGTTTGGTGCCTGTTCAACATCAATGG 343
..||||||||||.|||||.|||.|||||||.||.||.|||||.|||||||
BPUM_2072___s 294 ACTGAAAATCCCGTTTCTCTGTTTGTTTGGGGCATGCTCAACTTCAATGG 343
BSNT_03483___ 344 AAACAGTTGCTGTCGCATCAGC-CTTAGTTGATGGCGGGTTTGCCAAAAG 392
||.|.||.||..|.||.||||| ||.| ||||||||||.||||||||.||
BPUM_2072___s 344 AATCGGTCGCCATTGCGTCAGCACTCA-TTGATGGCGGTTTTGCCAATAG 392
BSNT_03483___ 393 GGCACTCGCTGCCACTAGCAGTCACAATGCAACTGCGGAAAGACAGTTTC 442
.||..||||.||.||.||||||||.||||||||.||.|||.|.||.||||
BPUM_2072___s 393 AGCCATCGCAGCGACAAGCAGTCATAATGCAACGGCAGAACGCCAATTTC 442
BSNT_03483___ 443 GCTATCCGACAGAATACGGAGGCCAAAAACCGGACACTGCTACCTCCACT 492
|..||||.|||||||||||.||.||||||||.||.||.||.||....|||
BPUM_2072___s 443 GTAATCCAACAGAATACGGCGGACAAAAACCAGATACAGCCACAAGTACT 492
BSNT_03483___ 493 GTAACCGGAAGCGGTGCAGTTGTCATCAGTCAGACACCGGGTGATATCCA 542
||.||.||||||||.||.|||.|.||.||.|||.|.||...|...||.||
BPUM_2072___s 493 GTCACTGGAAGCGGGGCCGTTATTATTAGCCAGGCGCCCTCTCCAATTCA 542
BSNT_03483___ 543 AATCACAAGTGCGACTGTCGGAAAGGTTTCTGATTTAGGAATTACAGACC 592
|||.|||||.|||||.||.||.|.|||....|||.|.||.||||||||.|
BPUM_2072___s 543 AATTACAAGCGCGACAGTAGGCAGGGTGATGGATCTTGGGATTACAGATC 592
BSNT_03483___ 593 CTTTTGATATGGGATCGGCTATGGCTCCGGCTGCAGCTGATACAATTAAG 642
|.|||||.|||||||||||.|||||.|||||.||.||.|||||.||.||.
BPUM_2072___s 593 CATTTGACATGGGATCGGCCATGGCACCGGCAGCGGCGGATACCATCAAA 642
BSNT_03483___ 643 CAGCACTTTA-AAGATCT--CAACCGGACAGCGGATGATTATGATCTAAT 689
||||| |||| ||||.|| .|| |.||.|.|||.|||||.|||||.||
BPUM_2072___s 643 CAGCA-TTTAGAAGACCTTGGAA--GAACGGTGGACGATTACGATCTGAT 689
BSNT_03483___ 690 CCTGACAGGTGACCTGTCAGGCGTCGGTTCTCCAATCGTAAAAGA-CATC 738
..|.|||||.||..|.||.||..|.|||||.|||||..||||.|| |.||
BPUM_2072___s 690 TTTAACAGGAGATTTATCTGGTATTGGTTCGCCAATTTTAAAGGATCTTC 739
BSNT_03483___ 739 TTAA--AAGAAGATGGATATCCAGTCGGCACAAAGCATGATGATTGCGGG 786
|.|| |||||| |.|| ||.|.|.||.|.|||||||||||||||||||
BPUM_2072___s 740 TGAAGGAAGAAG--GCAT-TCAACTTGGGAGAAAGCATGATGATTGCGGG 786
BSNT_03483___ 787 CTTCTGATTTACACTCCGGATCAGCAGGTCTTTGCCGGGGGGAGCGGCTG 836
.|..|.||.||.||.||.|||||..|.||.||.||.||.|||||.|||||
BPUM_2072___s 787 TTAATCATCTATACACCTGATCAAAATGTATTCGCTGGTGGGAGTGGCTG 836
BSNT_03483___ 837 TGCTTGTTCAGCGGTTGT--CACCTACTCTCATATTTTTAAGCAGCTGAG 884
||||||||||||.||||| ||..||.||.||| ||||.||| |..|||.
BPUM_2072___s 837 TGCTTGTTCAGCTGTTGTGACATTTAGTCACAT-TTTTCAAG-AAATGAA 884
BSNT_03483___ 885 AGAAGGAAATTT--AAACCGTGTATTTGTCGTAGCGACCGGGGCACTATT 932
||.|||.|||.| ||| |.|||.|.||.||.||.|||||.||.|||.|
BPUM_2072___s 885 AGCAGGGAATCTGCAAA--GAGTACTCGTTGTGGCAACCGGAGCGCTACT 932
BSNT_03483___ 933 AAGCCCGACGATGATCCAGCAAAAAGAAACCATCCCGACTATCGCCCACG 982
||||||.|.||||.|||||||||||||.|||||.||.||.||.||.||||
BPUM_2072___s 933 AAGCCCTATGATGGTCCAGCAAAAAGAGACCATTCCAACCATTGCGCACG 982
BSNT_03483___ 983 GGGTTGTATTTGAGCGTGCAGGAGGTG-CATCTTAA 1017
|.||.||||||||||||||||||||.| .|.||.|
BPUM_2072___s 983 GTGTCGTATTTGAGCGTGCAGGAGGAGAGAGCTAA- 1017
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