Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03477 and BPUM_2067
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:59
# Commandline: needle
# -asequence dna-align/BSNT_03477___ypuA.1.24716.seq
# -bsequence dna-align/BPUM_2067___ypuA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03477___ypuA-BPUM_2067___ypuA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03477___ypuA-BPUM_2067___ypuA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03477___ypuA
# 2: BPUM_2067___ypuA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 936
# Identity: 644/936 (68.8%)
# Similarity: 644/936 (68.8%)
# Gaps: 99/936 (10.6%)
# Score: 2094.5
#
#
#=======================================
BSNT_03477___ 1 TTGAAG-----------------AAAAT---TTGGATTGGAATGCTGGCA 30
|||||| ||||| | |.||||.|||.|||||
BPUM_2067___y 1 TTGAAGGAGGTCAACATGTTTAAAAAATCAAT--GCTTGGTATGATGGCA 48
BSNT_03477___ 31 GCGGCCGTTTTGC----TGCTGACGGTTCCGAAGGTCAGTCTCGCGGATG 76
|||..|.||||.| ||.|| || ||.||.|||||..|.|||||||
BPUM_2067___y 49 GCGCTCCTTTTCCTTATTGGTG-CG---CCAAAAGTCAGCTTAGCGGATG 94
BSNT_03477___ 77 CCGCAGTTGGAGATGTCATTGTAACACTAGGTGC-TGATTTGTCAGAA-T 124
|.||.||.||.||||||||.||.|||||.|| || .||.|| || |
BPUM_2067___y 95 CAGCTGTCGGCGATGTCATCGTCACACTTGG-GCAAGACTT-----AACT 138
BSNT_03477___ 125 CCGACAAA----CAAAAAGTGCTTGATGAAATGAATGTCCCTGATAATGC 170
|||.|..| ||.||.||||||||.||..|||||...|||||.|||||
BPUM_2067___y 139 CCGGCTGATCGCCAGAAGGTGCTTGACGAGTTGAATCCACCTGAAAATGC 188
BSNT_03477___ 171 CACAACGGT--AACCGTGACCAATAAGGAAGAACATGAATATTTAGGAAA 218
.||||...| || ||.||||||||.|||||.|||||||||||||||||
BPUM_2067___y 189 GACAAAAATTGAA--GTAACCAATAAAGAAGAGCATGAATATTTAGGAAA 236
BSNT_03477___ 219 ATATATATCAAACGCGC------AAATCGGATCGAGAGCGATTTCTTCAT 262
.||||| |.|.| ..|||||..||||||||.|.||.||||
BPUM_2067___y 237 GTATAT------CCCTCGTTCTTCTATCGGGACGAGAGCGTTATCATCAT 280
BSNT_03477___ 263 CGTCAATCACCATTGCCAAAAA--AGGCTCCGGATTGAATGTTGAGACCC 310
|.||.||||||||.| ||||| |||..|.||..|||.|||.||.||.|
BPUM_2067___y 281 CATCTATCACCATAG--AAAAATCAGGTACTGGTCTGACTGTGGATACAC 328
BSNT_03477___ 311 ATAATATCAGCGGCATCACGGATGAAATGTACCTGAATGCACTGATGACA 360
||||.||||....|||.||.|||||.|||||..|.|||||..|.||||||
BPUM_2067___y 329 ATAACATCAAGACCATTACAGATGAGATGTATTTAAATGCTTTAATGACA 378
BSNT_03477___ 361 GCCGGTGTGAAAGATG-CGAAGGTGTATGTTACAGCACCGTTTGAAGTAT 409
||||||||.||.|||| |.|||.||| |||.||.|||||||||||.||.|
BPUM_2067___y 379 GCCGGTGTCAAGGATGCCAAAGTTGT-TGTGACTGCACCGTTTGAGGTTT 427
BSNT_03477___ 410 CCGGGACTGCGGCTTTAACTGGATTGATT-AAGGCGTATGAAGTTTCTTC 458
|.||.||.||.||..|.|| ||.||.||| ||.||.||||||||.|||..
BPUM_2067___y 428 CTGGTACAGCCGCACTGAC-GGGTTTATTAAAAGCCTATGAAGTGTCTAG 476
BSNT_03477___ 459 TGACGAAGCGATCTCGGAGGATGTTAAGCAGGTCGCCAACCAAGAGCTTG 508
.|||.||||.|||.|.||.|||||.||||||||.||.|||.|||||||.|
BPUM_2067___y 477 CGACAAAGCTATCCCAGAAGATGTGAAGCAGGTAGCAAACGAAGAGCTGG 526
BSNT_03477___ 509 TCACGACATCAGAGCTTGGAGACAAAATCGGTAACGAAAATGCGGCAGCC 558
|.||.||.||..|..|.||.|||...|||||.||.||.||||||.|.|||
BPUM_2067___y 527 TGACAACGTCTAAATTGGGTGACTCCATCGGGAAAGACAATGCGTCTGCC 576
BSNT_03477___ 559 CTGATTGCAAAAATCAAAGAAGAGTTTGCTAAAAACGGGGTGCCT--GAT 606
||.||.|||||||||||.||.||..||||.||||||||.||.||| .|.
BPUM_2067___y 577 CTTATCGCAAAAATCAAGGATGACATTGCGAAAAACGGTGTCCCTAAAAC 626
BSNT_03477___ 607 AATAAAGCTGACATCGAAAAACAAGTGGACGACGCAGCTTCTGATTTAAA 656
||.||| .||..|.|||.||.|||||||..|.||.||||||||||||||
BPUM_2067___y 627 AACAAA--AGAAGTGGAAGAAAAAGTGGATCAAGCTGCTTCTGATTTAAA 674
BSNT_03477___ 657 CGTCACACTTACTGACAGC-----CAAAAGAACCAGCTTGTCTCCCTATT 701
|.|.|..||.|| || ||||||.|.||||||.|.||.||.||
BPUM_2067___y 675 CTTAAATCTAAC-----GCAAGAACAAAAGGATCAGCTTATTTCTCTGTT 719
BSNT_03477___ 702 CAATAAGATGAAAAACGCTGACATTGACTGGGGACAGGTCAGTGA--CCA 749
|.||||.|||||.|||....|.||.||.|||...||.|| || || .||
BPUM_2067___y 720 CGATAAAATGAAGAACATCAATATCGATTGGAACCAAGT-AG-GATCTCA 767
BSNT_03477___ 750 GCTAGATAAAGCGAAAGATAAGATTACGAAATTCATAGAATCAGATGAAG 799
..|.||||||||.|||||.|||||||||||||||||||||||||||||||
BPUM_2067___y 768 AATCGATAAAGCAAAAGACAAGATTACGAAATTCATAGAATCAGATGAAG 817
BSNT_03477___ 800 GCAAAAACTTCATCCAGAAAGTCATT---GATTTCTTCGTATCTATCTGG 846
|.||||||.||.|.|| |||| ||| ||||||||.||.||.||.|||
BPUM_2067___y 818 GGAAAAACCTCCTTCA-AAAG--ATTTGGGATTTCTTTGTCTCCATTTGG 864
BSNT_03477___ 847 AATGCGATTGTATCTATATT---------CAAATAA 873
||.|||||.||.|||.|||| .||||||
BPUM_2067___y 865 AACGCGATCGTCTCTGTATTTACTGGAGGAAAATAA 900
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