Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03466 and BPUM_2062
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:59
# Commandline: needle
# -asequence dna-align/BSNT_03466___ypuD.1.24716.seq
# -bsequence dna-align/BPUM_2062___ypuD.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03466___ypuD-BPUM_2062___ypuD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03466___ypuD-BPUM_2062___ypuD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03466___ypuD
# 2: BPUM_2062___ypuD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 367
# Identity: 235/367 (64.0%)
# Similarity: 235/367 (64.0%)
# Gaps: 44/367 (12.0%)
# Score: 677.5
#
#
#=======================================
BSNT_03466___ 1 ATGGGAAGAATAAAAACCAAGATTACCATTCTGTTAGTGCTTTTGCTTTT 50
|||||.|.|||.|||...||.||..||| |.||| |||| ||||
BPUM_2062___y 1 ATGGGGAAAATTAAATTAAAAATGGCCA---TCTTA-----TTTG-TTTT 41
BSNT_03466___ 51 ACTTGC-------AGGC---GGTTATATGTACATAAATG--ATG----TT 84
|| ||| |||| ||.|||.|.|||||.|||| ||| ||
BPUM_2062___y 42 AC-TGCTTTGTTTAGGCGCAGGATATTTATACATGAATGGCATGAAAATT 90
BSNT_03466___ 85 GAGCTGAAGGATGTTCCGACAGCAATTGGACAAACCTTGTCCTCGGAA-- 132
| |.|||||.||.|||||.|||||..|||.|||..| ||
BPUM_2062___y 91 G------AAGATGTGCCAACAGCCATTGGTGAAAGCTTAAC-----AAAT 129
BSNT_03466___ 133 ---GAAGAGGAATACACCATCCAGGAATATAAAGTGACGAAAATTGACGG 179
||..|.||.||.||||||.|.|||||||...|.||||||||||||||
BPUM_2062___y 130 AATGATAAAGATTATACCATCTATGAATATACCATTACGAAAATTGACGG 179
BSNT_03466___ 180 CTCA-GAGTATCATGGAGTAGCAGAAAACGGAACGAAAATCATCTTTAAC 228
|.| ||||||.|.||...||||.|||||||.||.||||||||.||||..
BPUM_2062___y 180 -TGATGAGTATTACGGTCAAGCAAAAAACGGCACAAAAATCATTTTTAGT 228
BSNT_03466___ 229 GGAAAAAAATTAAATCAGGATTTATCTGATATAAAAGAAGGTGACAAGAT 278
||.||.|||||..|..|.|||.|..||||..|.||..|||||||....||
BPUM_2062___y 229 GGGAAGAAATTTGAAGATGATGTGGCTGACTTGAAGAAAGGTGATCGTAT 278
BSNT_03466___ 279 TAAGGCATACTTCAGCAAATCAAAGCGGATCGACGGATTAATCAAGGTTG 328
|||.||.|||||.||.||...|||..|.||.||.||..|.||.||.||.|
BPUM_2062___y 279 TAAAGCCTACTTTAGTAATGAAAAAAGAATAGATGGTCTTATAAAAGTAG 328
BSNT_03466___ 329 CAAAAGTGAATGATTAA 345
.||||||...|.|||||
BPUM_2062___y 329 TAAAAGTCGTTAATTAA 345
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