Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03466 and BPUM_2062

See Amino acid alignment / Visit BSNT_03466 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:59
# Commandline: needle
#    -asequence dna-align/BSNT_03466___ypuD.1.24716.seq
#    -bsequence dna-align/BPUM_2062___ypuD.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03466___ypuD-BPUM_2062___ypuD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03466___ypuD-BPUM_2062___ypuD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03466___ypuD
# 2: BPUM_2062___ypuD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 367
# Identity:     235/367 (64.0%)
# Similarity:   235/367 (64.0%)
# Gaps:          44/367 (12.0%)
# Score: 677.5
# 
#
#=======================================

BSNT_03466___      1 ATGGGAAGAATAAAAACCAAGATTACCATTCTGTTAGTGCTTTTGCTTTT     50
                     |||||.|.|||.|||...||.||..|||   |.|||     |||| ||||
BPUM_2062___y      1 ATGGGGAAAATTAAATTAAAAATGGCCA---TCTTA-----TTTG-TTTT     41

BSNT_03466___     51 ACTTGC-------AGGC---GGTTATATGTACATAAATG--ATG----TT     84
                     || |||       ||||   ||.|||.|.|||||.||||  |||    ||
BPUM_2062___y     42 AC-TGCTTTGTTTAGGCGCAGGATATTTATACATGAATGGCATGAAAATT     90

BSNT_03466___     85 GAGCTGAAGGATGTTCCGACAGCAATTGGACAAACCTTGTCCTCGGAA--    132
                     |      |.|||||.||.|||||.|||||..|||.|||..|     ||  
BPUM_2062___y     91 G------AAGATGTGCCAACAGCCATTGGTGAAAGCTTAAC-----AAAT    129

BSNT_03466___    133 ---GAAGAGGAATACACCATCCAGGAATATAAAGTGACGAAAATTGACGG    179
                        ||..|.||.||.||||||.|.|||||||...|.||||||||||||||
BPUM_2062___y    130 AATGATAAAGATTATACCATCTATGAATATACCATTACGAAAATTGACGG    179

BSNT_03466___    180 CTCA-GAGTATCATGGAGTAGCAGAAAACGGAACGAAAATCATCTTTAAC    228
                      |.| ||||||.|.||...||||.|||||||.||.||||||||.||||..
BPUM_2062___y    180 -TGATGAGTATTACGGTCAAGCAAAAAACGGCACAAAAATCATTTTTAGT    228

BSNT_03466___    229 GGAAAAAAATTAAATCAGGATTTATCTGATATAAAAGAAGGTGACAAGAT    278
                     ||.||.|||||..|..|.|||.|..||||..|.||..|||||||....||
BPUM_2062___y    229 GGGAAGAAATTTGAAGATGATGTGGCTGACTTGAAGAAAGGTGATCGTAT    278

BSNT_03466___    279 TAAGGCATACTTCAGCAAATCAAAGCGGATCGACGGATTAATCAAGGTTG    328
                     |||.||.|||||.||.||...|||..|.||.||.||..|.||.||.||.|
BPUM_2062___y    279 TAAAGCCTACTTTAGTAATGAAAAAAGAATAGATGGTCTTATAAAAGTAG    328

BSNT_03466___    329 CAAAAGTGAATGATTAA    345
                     .||||||...|.|||||
BPUM_2062___y    329 TAAAAGTCGTTAATTAA    345


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