Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03458 and BPUM_2058
See
Amino acid alignment /
Visit
BSNT_03458 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:59
# Commandline: needle
# -asequence dna-align/BSNT_03458___ribT.1.24716.seq
# -bsequence dna-align/BPUM_2058___ribT.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03458___ribT-BPUM_2058___ribT.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03458___ribT-BPUM_2058___ribT.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03458___ribT
# 2: BPUM_2058___ribT
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 386
# Identity: 269/386 (69.7%)
# Similarity: 269/386 (69.7%)
# Gaps: 43/386 (11.1%)
# Score: 915.5
#
#
#=======================================
BSNT_03458___ 1 ATGTTAATTCGTTATAAAAAATCGTTTGAAAAGATTGCGATGGGGCTTCT 50
|||||||||||||||||.|..||.||||||||.|||||.||||||||.||
BPUM_2058___r 1 ATGTTAATTCGTTATAAGAGGTCTTTTGAAAAAATTGCCATGGGGCTACT 50
BSNT_03458___ 51 TTCGTTTATGCCGAATGAAAAAGACCTTAAGCAGCTTCAGCAGACAATTA 100
.||.||.||||||..|||.||||||.|.||.||||||||||||||.||.|
BPUM_2058___r 51 CTCCTTCATGCCGGGTGAGAAAGACGTCAAACAGCTTCAGCAGACGATGA 100
BSNT_03458___ 101 AGGACTACGAAACGGAT-ACAGACCGCCAGCTCTTTCTTTGGAAAGAGGA 149
||...||.||||.|||| |.|| .||.|||||.||.|||||||||||.|.
BPUM_2058___r 101 AGTCTTATGAAATGGATGAAAG-TCGGCAGCTGTTCCTTTGGAAAGATGG 149
BSNT_03458___ 150 CGAGGATATCGTCGGAGCAATCG--GAGTCGAAAAAAAGGATTCTGAGGT 197
||||||||||||.||.||.||.| |.||.|||||.| ||.....|.||
BPUM_2058___r 150 CGAGGATATCGTAGGTGCCATTGGTGTGTTGAAAACA--GACAACCAAGT 197
BSNT_03458___ 198 TGAGATCCGGCATATCAGTGTGAATCCTTCTCATCGCCATCAAGGAATCG 247
..|.|||..||||||.|||||||||||.||.|||||..||||||||||||
BPUM_2058___r 198 ACAAATCGAGCATATTAGTGTGAATCCATCCCATCGAGATCAAGGAATCG 247
BSNT_03458___ 248 GAAAACAGATGATGGATGCTTTA-------AAGCATTTATTCAAAACGCA 290
|.||..|.||| |.|||| ||| |..||||||||||..|
BPUM_2058___r 248 GCAAGGAAATG------GTTTTAGCCGTGGAAG-AGGTATTCAAAACCAA 290
BSNT_03458___ 291 AGTACTGGTTCCAAATGAATTAACGCAGAGCTT-TTTCGAACGTTGTCAA 339
|..|||..|||||||||||||||||||..|||| ||||..|.| |||||
BPUM_2058___r 291 AACACTCATTCCAAATGAATTAACGCAAGGCTTCTTTCATAAG-TGTCA- 338
BSNT_03458___ 340 GGTCAGCAGGATCAAGACATTTCATACAATAATTAA 375
|||| |.|.||| |.|||
BPUM_2058___r 339 ---CAGC-GAAACAA------------ACTAA---- 354
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.