Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03457 and BPUM_2057
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:59
# Commandline: needle
# -asequence dna-align/BSNT_03457___ypuF.1.24716.seq
# -bsequence dna-align/BPUM_2057___ypuF.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03457___ypuF-BPUM_2057___ypuF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03457___ypuF-BPUM_2057___ypuF.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03457___ypuF
# 2: BPUM_2057___ypuF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 579
# Identity: 362/579 (62.5%)
# Similarity: 362/579 (62.5%)
# Gaps: 108/579 (18.7%)
# Score: 1074.0
#
#
#=======================================
BSNT_03457___ 1 TTGTATCCGAAAGCTTATATAGATTATCTCGTTGAGTTTCACGCGACACG 50
.|||||||..||||.||..|.|.||.|.|...|||.|||||..|||||.|
BPUM_2057___y 1 GTGTATCCTGAAGCGTACGTGGCTTTTTTACATGAATTTCATACGACAAG 50
BSNT_03457___ 51 GGATTATTTTGAATGCCATGAAATATTAGAAGAATATTGGAAGGAAGATC 100
.|||||||||||.||.||||||||..|.||.|||||||||||.|||||.|
BPUM_2057___y 51 AGATTATTTTGAGTGTCATGAAATTCTTGAGGAATATTGGAAAGAAGACC 100
BSNT_03457___ 101 CGCCAAAGAAACGAAAACGCTATTGGGTCGGCTTTATTCAGCTTGCAGTT 150
||||..||.|.||.|||...||||||||.|||||.|||||||||||.|||
BPUM_2057___y 101 CGCCTGAGCAGCGCAAAGAATATTGGGTTGGCTTCATTCAGCTTGCCGTT 150
BSNT_03457___ 151 GCTTTATATCATCACAGAAGGCAGAATACAGCCGGGGCAAAAAGACTGAT 200
|||||.||||||||.|||.||...|||..|...||.||||||.|.||.||
BPUM_2057___y 151 GCTTTGTATCATCAAAGACGGGGAAATGGAAAAGGTGCAAAACGGCTCAT 200
BSNT_03457___ 201 GGCAAACAGCATCCGAATT-CTCAAAGCAGAACACCGGGCAG-----TCG 244
|.||||.|||.|.| |.|| || ||.||.|.|||||.|.| |||
BPUM_2057___y 201 GTCAAATAGCCTTC-ACTTACT---AGAAGCAAACCGGTCCGTATTATCG 246
BSNT_03457___ 245 AAGACT-TAGGGCTTGATCATG-GCCGTTTGCTCGAGCTTATG-CAATCG 291
|| | |.||.||.|||.||| |.||||| |||.|.|||.|| .|||
BPUM_2057___y 247 AA---TCTCGGTCTGGATGATGAGGCGTTT-CTCAAACTTCTGAGAAT-- 290
BSNT_03457___ 292 GTTTACGAACAAATCGAAACGGGCT------CTGCCTATA--AAAGCATT 333
|.|.|.||| ||||..|||| .|||| ||| ||||..|.
BPUM_2057___y 291 GCTAAAGAA------GAAAATGGCTGAAGACATGCC-ATACGAAAGTGTG 333
BSNT_03457___ 334 ATGCTGCCAATCAAAGATGAGAAACTGGAGGAAGCA------------TG 371
|||||.||.||.|||||| |||||| ||
BPUM_2057___y 334 ATGCTCCCGATTAAAGAT------------GAAGCACTCTTGTCTCTCTG 371
BSNT_03457___ 372 CAGGATCGAATGCAGGAAA------AAAAAGTATACATGGGGGCAGTCCA 415
| ||.|||| ||||||.| ||.|.|.||.
BPUM_2057___y 372 C-----------CAAGAAATGGCTCAAAAAGAA-------GGACTGACCT 403
BSNT_03457___ 416 GT-GCACTCAGGA--------------ACATATTTCTGATCGACAAACAC 450
.| || ||||| |||.||||.|||||||.|||||.
BPUM_2057___y 404 TTGGC---CAGGAGAGTAACTTATCCCACACATTTTTGATCGAAAAACAT 450
BSNT_03457___ 451 CGTTTGCGGGATCGGACTGACGTCATCCGTGAACGTGAAAAAG-AAATAG 499
.|..||||.||.|||||.||.||..|.|.|||||| .|||||| ||||.|
BPUM_2057___y 451 AGACTGCGTGACCGGACAGATGTATTGCTTGAACG-AAAAAAGCAAATCG 499
BSNT_03457___ 500 AACGCAGAAAAAAAAGCAGAGG-CTGA-- 525
||| |.|||||||||||||| |||.
BPUM_2057___y 500 AAC---GTAAAAAAAGCAGAGGACTGTAG 525
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