Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03456 and BPUM_2055
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:59
# Commandline: needle
# -asequence dna-align/BSNT_03456___scpA.1.24716.seq
# -bsequence dna-align/BPUM_2055___scpA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03456___scpA-BPUM_2055___scpA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03456___scpA-BPUM_2055___scpA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03456___scpA
# 2: BPUM_2055___scpA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 786
# Identity: 565/786 (71.9%)
# Similarity: 565/786 (71.9%)
# Gaps: 57/786 ( 7.3%)
# Score: 2026.5
#
#
#=======================================
BSNT_03456___ 1 ATGGAAGAATATCAAGTGAAAATTGATACGTTTGAGGGCCCATTGGACCT 50
|||...||||||||.||||||||.|||.|||||||.||.||.||||||.|
BPUM_2055___s 1 ATGCTGGAATATCAGGTGAAAATAGATTCGTTTGAAGGTCCTTTGGACTT 50
BSNT_03456___ 51 GCTGCTTCATTTAATCAATCGTCTTGAAATTGACATATATGATATACCTG 100
.||..|.|||||||||||.||..|.||||||||.||.||||||||.||.|
BPUM_2055___s 51 ACTTTTACATTTAATCAACCGGTTGGAAATTGATATTTATGATATTCCCG 100
BSNT_03456___ 101 TGGCGAAGATCACTGAACAATATTTATTATATGTACATACGATGCGTGTG 150
|.||.||.||.||.||.||.||||||||||||||.|||||.|||.|.|.|
BPUM_2055___s 101 TTGCTAAAATTACGGAGCAGTATTTATTATATGTCCATACCATGAGGGAG 150
BSNT_03456___ 151 CTTGAGCTCGATATGGCCAGCGAGTATTTGGTTATGGCTGCCACGCTGCT 200
|||||.||.|||.||||.||.||.||||||||.||||||||.||.||.||
BPUM_2055___s 151 CTTGAACTTGATGTGGCAAGTGAATATTTGGTGATGGCTGCAACCCTCCT 200
BSNT_03456___ 201 CAGCATTAAAAGCAGAATGCTGCTCCCGAAGCAAGAGGAGGAGCTTTTTG 250
.||.|||||||||||||||||.||.||.||.||||||||.|||||.||||
BPUM_2055___s 201 GAGTATTAAAAGCAGAATGCTCCTTCCAAAACAAGAGGAAGAGCTATTTG 250
BSNT_03456___ 251 AAGATGAATTACTTGAA---GAAGAAGATCCGCGGGAGGAACTGATTGAA 297
|.||.||..|.|||||| |||||.||.||.||.||.||||||||||..
BPUM_2055___s 251 ATGAAGATCTGCTTGAAGAGGAAGAGGACCCTCGAGAAGAACTGATTGGC 300
BSNT_03456___ 298 AAGCTGATTGAGTATCGAAAATATAAAGATGCGGCGAAGGATTTAAAAGA 347
||.||||||||.||.|||||.|||||||||||.||..|.||..||||.||
BPUM_2055___s 301 AAACTGATTGAATACCGAAAGTATAAAGATGCCGCACAAGAACTAAAGGA 350
BSNT_03456___ 348 ACGGGAAGAAGAAAGACAAAAATCGTTCACGAAACCGCCGAGTGATTTGA 397
|||.||.||||||||.|||||..|.||.||.|||||.|||||||||||.|
BPUM_2055___s 351 ACGCGAGGAAGAAAGGCAAAATGCCTTTACAAAACCTCCGAGTGATTTAA 400
BSNT_03456___ 398 GTGAATATGCAAAAGAAGTAAAACAGTCTGA--------GCAAAAGCTCT 439
|.||||.|||||||||| ||.|| .||.||.||..
BPUM_2055___s 401 GCGAATTTGCAAAAGAA---------TCGGAAGCGAAGGACACAAACTTA 441
BSNT_03456___ 440 C-TGTCACGGTCTATGATATGATCGGAGCTTTTCAAAAAGTGCTGAAACG 488
| |||||||||.|||||||||.|.||.||.||.|||||.||..||||.||
BPUM_2055___s 442 CATGTCACGGTGTATGATATGTTAGGTGCGTTCCAAAAGGTATTGAACCG 491
BSNT_03456___ 489 CAAAAAAATAAACAGGCCGATGGAAACAACA---------ATTACAAGAC 529
.|||||||||| ||| ||.||.|| ||||||||||
BPUM_2055___s 492 AAAAAAAATAA------CGA---AACCAGCACCATCTAGGATTACAAGAC 532
BSNT_03456___ 530 AGGACATACCAATCGAAGCCAGAATGAACGAAATCGTGCACAGCTT--GA 577
|.||.||.||.||.||||.||.||||||.||.||..||.||...|| ||
BPUM_2055___s 533 AAGAAATCCCGATTGAAGACAAAATGAATGAGATTATGAACCATTTAAGA 582
BSNT_03456___ 578 AATCTAGAGGAACGA------GAATCAACTTTATGGATCTGTTTCCATAT 621
|| ||||| |.|.|||.||.|||..|||.||||.|.||
BPUM_2055___s 583 AA--------AACGAAAAAGCGGACCAATTTCATGACTCTATTTCAACAT 624
BSNT_03456___ 622 GAGCAAAAAGAACATTTAGTAGTGACCTTTCTAGCTGTTCTCGAGCTGAT 671
||.|||||.||.|||.|.||.|||||.|||||.||||||||.||..||||
BPUM_2055___s 625 GATCAAAAGGAGCATCTTGTCGTGACGTTTCTTGCTGTTCTTGAATTGAT 674
BSNT_03456___ 672 GAAAAATCAGCTGGTCCTCATTGAACAGG-AGCACAATTTTTCAGATATT 720
|||||.|||.|...||.|..|.||.|||| ||.| ||.|||..|||.|||
BPUM_2055___s 675 GAAAAGTCATCAAATCATGTTAGAGCAGGAAGGA-AACTTTGAAGACATT 723
BSNT_03456___ 721 TACATTACGGGGAGTGAATCCATTCATGGGGCTTGA 756
||.||.|..|||||||||.|.|||||||..||||||
BPUM_2055___s 724 TATATAATAGGGAGTGAAACGATTCATGACGCTTGA 759
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