Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03456 and BPUM_2055

See Amino acid alignment / Visit BSNT_03456 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:59
# Commandline: needle
#    -asequence dna-align/BSNT_03456___scpA.1.24716.seq
#    -bsequence dna-align/BPUM_2055___scpA.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03456___scpA-BPUM_2055___scpA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03456___scpA-BPUM_2055___scpA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03456___scpA
# 2: BPUM_2055___scpA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 786
# Identity:     565/786 (71.9%)
# Similarity:   565/786 (71.9%)
# Gaps:          57/786 ( 7.3%)
# Score: 2026.5
# 
#
#=======================================

BSNT_03456___      1 ATGGAAGAATATCAAGTGAAAATTGATACGTTTGAGGGCCCATTGGACCT     50
                     |||...||||||||.||||||||.|||.|||||||.||.||.||||||.|
BPUM_2055___s      1 ATGCTGGAATATCAGGTGAAAATAGATTCGTTTGAAGGTCCTTTGGACTT     50

BSNT_03456___     51 GCTGCTTCATTTAATCAATCGTCTTGAAATTGACATATATGATATACCTG    100
                     .||..|.|||||||||||.||..|.||||||||.||.||||||||.||.|
BPUM_2055___s     51 ACTTTTACATTTAATCAACCGGTTGGAAATTGATATTTATGATATTCCCG    100

BSNT_03456___    101 TGGCGAAGATCACTGAACAATATTTATTATATGTACATACGATGCGTGTG    150
                     |.||.||.||.||.||.||.||||||||||||||.|||||.|||.|.|.|
BPUM_2055___s    101 TTGCTAAAATTACGGAGCAGTATTTATTATATGTCCATACCATGAGGGAG    150

BSNT_03456___    151 CTTGAGCTCGATATGGCCAGCGAGTATTTGGTTATGGCTGCCACGCTGCT    200
                     |||||.||.|||.||||.||.||.||||||||.||||||||.||.||.||
BPUM_2055___s    151 CTTGAACTTGATGTGGCAAGTGAATATTTGGTGATGGCTGCAACCCTCCT    200

BSNT_03456___    201 CAGCATTAAAAGCAGAATGCTGCTCCCGAAGCAAGAGGAGGAGCTTTTTG    250
                     .||.|||||||||||||||||.||.||.||.||||||||.|||||.||||
BPUM_2055___s    201 GAGTATTAAAAGCAGAATGCTCCTTCCAAAACAAGAGGAAGAGCTATTTG    250

BSNT_03456___    251 AAGATGAATTACTTGAA---GAAGAAGATCCGCGGGAGGAACTGATTGAA    297
                     |.||.||..|.||||||   |||||.||.||.||.||.||||||||||..
BPUM_2055___s    251 ATGAAGATCTGCTTGAAGAGGAAGAGGACCCTCGAGAAGAACTGATTGGC    300

BSNT_03456___    298 AAGCTGATTGAGTATCGAAAATATAAAGATGCGGCGAAGGATTTAAAAGA    347
                     ||.||||||||.||.|||||.|||||||||||.||..|.||..||||.||
BPUM_2055___s    301 AAACTGATTGAATACCGAAAGTATAAAGATGCCGCACAAGAACTAAAGGA    350

BSNT_03456___    348 ACGGGAAGAAGAAAGACAAAAATCGTTCACGAAACCGCCGAGTGATTTGA    397
                     |||.||.||||||||.|||||..|.||.||.|||||.|||||||||||.|
BPUM_2055___s    351 ACGCGAGGAAGAAAGGCAAAATGCCTTTACAAAACCTCCGAGTGATTTAA    400

BSNT_03456___    398 GTGAATATGCAAAAGAAGTAAAACAGTCTGA--------GCAAAAGCTCT    439
                     |.||||.||||||||||         ||.||        .||.||.||..
BPUM_2055___s    401 GCGAATTTGCAAAAGAA---------TCGGAAGCGAAGGACACAAACTTA    441

BSNT_03456___    440 C-TGTCACGGTCTATGATATGATCGGAGCTTTTCAAAAAGTGCTGAAACG    488
                     | |||||||||.|||||||||.|.||.||.||.|||||.||..||||.||
BPUM_2055___s    442 CATGTCACGGTGTATGATATGTTAGGTGCGTTCCAAAAGGTATTGAACCG    491

BSNT_03456___    489 CAAAAAAATAAACAGGCCGATGGAAACAACA---------ATTACAAGAC    529
                     .||||||||||      |||   ||.||.||         ||||||||||
BPUM_2055___s    492 AAAAAAAATAA------CGA---AACCAGCACCATCTAGGATTACAAGAC    532

BSNT_03456___    530 AGGACATACCAATCGAAGCCAGAATGAACGAAATCGTGCACAGCTT--GA    577
                     |.||.||.||.||.||||.||.||||||.||.||..||.||...||  ||
BPUM_2055___s    533 AAGAAATCCCGATTGAAGACAAAATGAATGAGATTATGAACCATTTAAGA    582

BSNT_03456___    578 AATCTAGAGGAACGA------GAATCAACTTTATGGATCTGTTTCCATAT    621
                     ||        |||||      |.|.|||.||.|||..|||.||||.|.||
BPUM_2055___s    583 AA--------AACGAAAAAGCGGACCAATTTCATGACTCTATTTCAACAT    624

BSNT_03456___    622 GAGCAAAAAGAACATTTAGTAGTGACCTTTCTAGCTGTTCTCGAGCTGAT    671
                     ||.|||||.||.|||.|.||.|||||.|||||.||||||||.||..||||
BPUM_2055___s    625 GATCAAAAGGAGCATCTTGTCGTGACGTTTCTTGCTGTTCTTGAATTGAT    674

BSNT_03456___    672 GAAAAATCAGCTGGTCCTCATTGAACAGG-AGCACAATTTTTCAGATATT    720
                     |||||.|||.|...||.|..|.||.|||| ||.| ||.|||..|||.|||
BPUM_2055___s    675 GAAAAGTCATCAAATCATGTTAGAGCAGGAAGGA-AACTTTGAAGACATT    723

BSNT_03456___    721 TACATTACGGGGAGTGAATCCATTCATGGGGCTTGA    756
                     ||.||.|..|||||||||.|.|||||||..||||||
BPUM_2055___s    724 TATATAATAGGGAGTGAAACGATTCATGACGCTTGA    759


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_03456 and BPUM_2055

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
