Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03455 and BPUM_2054

See Amino acid alignment / Visit BSNT_03455 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:59
# Commandline: needle
#    -asequence dna-align/BSNT_03455___ypuH.1.24716.seq
#    -bsequence dna-align/BPUM_2054___scpB.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03455___ypuH-BPUM_2054___scpB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03455___ypuH-BPUM_2054___scpB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03455___ypuH
# 2: BPUM_2054___scpB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 617
# Identity:     435/617 (70.5%)
# Similarity:   435/617 (70.5%)
# Gaps:          46/617 ( 7.5%)
# Score: 1465.5
# 
#
#=======================================

BSNT_03455___      1 ATGGGGCTTGATATCGTGAATTGGAAAGCTATTGTGGAAGCCCTTCTTTA     50
                     |||..||||||||||||||||||||||||.||..|.|||||.||.||.||
BPUM_2054___s      1 ATGACGCTTGATATCGTGAATTGGAAAGCCATCATAGAAGCGCTGCTGTA     50

BSNT_03455___     51 TGCGGCAGGCGATGAAGGGCTT-ACAAAAAAGCAGCTGTTAACAGTGCTT     99
                     |||.|||||.||.||| ||||| ||||||||.|||||..|..|.||.|||
BPUM_2054___s     51 TGCAGCAGGTGACGAA-GGCTTAACAAAAAAACAGCTTATGTCTGTTCTT     99

BSNT_03455___    100 GAAATCGAAG----AGCCTGAACTGAACACGATCATGGCGGATGT-----    140
                     |||.|.||||    |||.|.|..|||       |||    |||||     
BPUM_2054___s    100 GAAGTAGAAGAGGTAGCGTTACTTGA-------CAT----GATGTCTGCC    138

BSNT_03455___    141 GGC--GGACGAATACCGCGAAGATAC----ACGAGGGATTGAACTTATTG    184
                     |.|  |||.|||||.|    |.|.||    ||||||.|||||.||.||||
BPUM_2054___s    139 GTCAAGGAAGAATATC----AAAAACAAGAACGAGGAATTGAGCTCATTG    184

BSNT_03455___    185 AGTATGCAGATACGTACATGCTCTCTACCAAAAAAG----ACTTTGCGC-    229
                     |.|||||||||.|.||.||||| .||..||||||||    ||    .|| 
BPUM_2054___s    185 AATATGCAGATTCTTATATGCT-GCTGACAAAAAAGGAATAC----AGCA    229

BSNT_03455___    230 CTTACTTGAAAAAACTGATTGAAGTGCCGTCAAAGGGCCTTTCTCAAGCA    279
                     .|||.|||||||||.|..|.||....||.||.||.||..|.|||||.|||
BPUM_2054___s    230 TTTATTTGAAAAAATTAGTCGAGACCCCATCCAAAGGTTTGTCTCAGGCA    279

BSNT_03455___    280 TCTTTAGAAGTACTGGCCATTGTTTCATACAAACAGCCAATTACGAGAGC    329
                     .|..|.||||||||.||.||.|||||.||.||||||||.||.||..||..
BPUM_2054___s    280 GCGCTTGAAGTACTCGCAATCGTTTCTTATAAACAGCCTATCACACGAAG    329

BSNT_03455___    330 AGAAATTGAAGAAATCAGAGGAGTAAAATCAGAGCGGATTTTACACAGTC    379
                     .||..|.||||||||.||||||||.|||||||||||..|..|.||.|||.
BPUM_2054___s    330 TGAGGTAGAAGAAATTAGAGGAGTCAAATCAGAGCGAGTGCTTCATAGTT    379

BSNT_03455___    380 TTGTCGCGAAGGCGCTATTGTGTGAAGTAGGGCGTGCCGATGGTCCGGGG    429
                     |.||.||.||.|||||..|.||||||||.||.|||||||||||.||.|||
BPUM_2054___s    380 TAGTAGCCAAAGCGCTGCTCTGTGAAGTTGGACGTGCCGATGGCCCTGGG    429

BSNT_03455___    430 CGGGCCATTTTATACGGTACTACGCCGACTTTTCTTGAACAATTCGGTCT    479
                     ||.||.|||.|.||.||.||.||.||.||.|||.|.||.||.||.||..|
BPUM_2054___s    430 CGAGCAATTCTTTATGGGACAACACCTACATTTTTAGAGCAGTTTGGCTT    479

BSNT_03455___    480 GAAAACGC--TGGACGAGCTTCCGCCGCTGCCTGAAAATGCGGAAGAAGA    527
                       |||.||  ||||.||.||.||||||||.||.||.||||.|||||.|||
BPUM_2054___s    480 --AAAGGCATTGGATGAACTACCGCCGCTTCCAGAGAATGTGGAAGCAGA    527

BSNT_03455___    528 CGTTCTTCAAGAAGAAGCAGATTTATTTTTTGAAAACTTTAACCAAACCT    577
                     .|.|.|.||||||||.||.|||.|.||||||||||||||.||.|||||.|
BPUM_2054___s    528 TGGTGTACAAGAAGAGGCTGATCTCTTTTTTGAAAACTTCAATCAAACAT    577

BSNT_03455___    578 TCGAAGATATAAAATAG    594
                     |.|||||.|||||||||
BPUM_2054___s    578 TTGAAGAGATAAAATAG    594


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