Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03455 and BPUM_2054
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:59
# Commandline: needle
# -asequence dna-align/BSNT_03455___ypuH.1.24716.seq
# -bsequence dna-align/BPUM_2054___scpB.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03455___ypuH-BPUM_2054___scpB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03455___ypuH-BPUM_2054___scpB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03455___ypuH
# 2: BPUM_2054___scpB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 617
# Identity: 435/617 (70.5%)
# Similarity: 435/617 (70.5%)
# Gaps: 46/617 ( 7.5%)
# Score: 1465.5
#
#
#=======================================
BSNT_03455___ 1 ATGGGGCTTGATATCGTGAATTGGAAAGCTATTGTGGAAGCCCTTCTTTA 50
|||..||||||||||||||||||||||||.||..|.|||||.||.||.||
BPUM_2054___s 1 ATGACGCTTGATATCGTGAATTGGAAAGCCATCATAGAAGCGCTGCTGTA 50
BSNT_03455___ 51 TGCGGCAGGCGATGAAGGGCTT-ACAAAAAAGCAGCTGTTAACAGTGCTT 99
|||.|||||.||.||| ||||| ||||||||.|||||..|..|.||.|||
BPUM_2054___s 51 TGCAGCAGGTGACGAA-GGCTTAACAAAAAAACAGCTTATGTCTGTTCTT 99
BSNT_03455___ 100 GAAATCGAAG----AGCCTGAACTGAACACGATCATGGCGGATGT----- 140
|||.|.|||| |||.|.|..||| ||| |||||
BPUM_2054___s 100 GAAGTAGAAGAGGTAGCGTTACTTGA-------CAT----GATGTCTGCC 138
BSNT_03455___ 141 GGC--GGACGAATACCGCGAAGATAC----ACGAGGGATTGAACTTATTG 184
|.| |||.|||||.| |.|.|| ||||||.|||||.||.||||
BPUM_2054___s 139 GTCAAGGAAGAATATC----AAAAACAAGAACGAGGAATTGAGCTCATTG 184
BSNT_03455___ 185 AGTATGCAGATACGTACATGCTCTCTACCAAAAAAG----ACTTTGCGC- 229
|.|||||||||.|.||.||||| .||..|||||||| || .||
BPUM_2054___s 185 AATATGCAGATTCTTATATGCT-GCTGACAAAAAAGGAATAC----AGCA 229
BSNT_03455___ 230 CTTACTTGAAAAAACTGATTGAAGTGCCGTCAAAGGGCCTTTCTCAAGCA 279
.|||.|||||||||.|..|.||....||.||.||.||..|.|||||.|||
BPUM_2054___s 230 TTTATTTGAAAAAATTAGTCGAGACCCCATCCAAAGGTTTGTCTCAGGCA 279
BSNT_03455___ 280 TCTTTAGAAGTACTGGCCATTGTTTCATACAAACAGCCAATTACGAGAGC 329
.|..|.||||||||.||.||.|||||.||.||||||||.||.||..||..
BPUM_2054___s 280 GCGCTTGAAGTACTCGCAATCGTTTCTTATAAACAGCCTATCACACGAAG 329
BSNT_03455___ 330 AGAAATTGAAGAAATCAGAGGAGTAAAATCAGAGCGGATTTTACACAGTC 379
.||..|.||||||||.||||||||.|||||||||||..|..|.||.|||.
BPUM_2054___s 330 TGAGGTAGAAGAAATTAGAGGAGTCAAATCAGAGCGAGTGCTTCATAGTT 379
BSNT_03455___ 380 TTGTCGCGAAGGCGCTATTGTGTGAAGTAGGGCGTGCCGATGGTCCGGGG 429
|.||.||.||.|||||..|.||||||||.||.|||||||||||.||.|||
BPUM_2054___s 380 TAGTAGCCAAAGCGCTGCTCTGTGAAGTTGGACGTGCCGATGGCCCTGGG 429
BSNT_03455___ 430 CGGGCCATTTTATACGGTACTACGCCGACTTTTCTTGAACAATTCGGTCT 479
||.||.|||.|.||.||.||.||.||.||.|||.|.||.||.||.||..|
BPUM_2054___s 430 CGAGCAATTCTTTATGGGACAACACCTACATTTTTAGAGCAGTTTGGCTT 479
BSNT_03455___ 480 GAAAACGC--TGGACGAGCTTCCGCCGCTGCCTGAAAATGCGGAAGAAGA 527
|||.|| ||||.||.||.||||||||.||.||.||||.|||||.|||
BPUM_2054___s 480 --AAAGGCATTGGATGAACTACCGCCGCTTCCAGAGAATGTGGAAGCAGA 527
BSNT_03455___ 528 CGTTCTTCAAGAAGAAGCAGATTTATTTTTTGAAAACTTTAACCAAACCT 577
.|.|.|.||||||||.||.|||.|.||||||||||||||.||.|||||.|
BPUM_2054___s 528 TGGTGTACAAGAAGAGGCTGATCTCTTTTTTGAAAACTTCAATCAAACAT 577
BSNT_03455___ 578 TCGAAGATATAAAATAG 594
|.|||||.|||||||||
BPUM_2054___s 578 TTGAAGAGATAAAATAG 594
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