Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03448 and BPUM_2049
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:58
# Commandline: needle
# -asequence dna-align/BSNT_03448___rluB.1.24716.seq
# -bsequence dna-align/BPUM_2049___rluB.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03448___rluB-BPUM_2049___rluB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03448___rluB-BPUM_2049___rluB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03448___rluB
# 2: BPUM_2049___rluB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 864
# Identity: 542/864 (62.7%)
# Similarity: 542/864 (62.7%)
# Gaps: 147/864 (17.0%)
# Score: 1878.0
#
#
#=======================================
BSNT_03448___ 0 -------------------------------------------------- 0
BPUM_2049___r 1 ATGGGAAATGGCTTTTTAGCTGAAATTAAACAGACGAATCGCTTATTTTT 50
BSNT_03448___ 0 -------------------------------------------------- 0
BPUM_2049___r 51 CCACGAATGCTTGTTTGTTTTAAGTCAAGCAAGTAAGATAGTACATGAGG 100
BSNT_03448___ 1 -----------ATGGAAAGACTGCAAAAAGTGATTGCTCATGCCGGAGTT 39
||||||.|..|.||.|||||.|||||.||||||||.||.
BPUM_2049___r 101 TGAAAGACAAAATGGAACGTTTACAGAAAGTAATTGCACATGCCGGCGTC 150
BSNT_03448___ 40 GCGTCGCGCAGAAAGGCAGAAGAGCTGATTAAAGAAGGAAAAGTAAAGGT 89
||.||..|..|||||||||||||..|.||||||||||||..|||.|..||
BPUM_2049___r 151 GCTTCAAGACGAAAGGCAGAAGAATTAATTAAAGAAGGACGAGTTACCGT 200
BSNT_03448___ 90 GAATGG-CAAAGTAGTAACAGAGCTAGGTGTTAAGGTCACCGG----TTC 134
.||||| |||| .|||.||.|||||.||.||.||.|| || |||
BPUM_2049___r 201 TAATGGTCAAA-CAGTGACTGAGCTCGGAGTAAAAGT----GGGCTCTTC 245
BSNT_03448___ 135 TGATCAGATTGAGGTAAACGGGTTAAAGGTTGAACGCGAAGAGCCGGTTT 184
.|||.|.|||||.||.|||||.||||||.|||||.|.|||||.|||||||
BPUM_2049___r 246 AGATAAAATTGAAGTCAACGGATTAAAGCTTGAAAGAGAAGAACCGGTTT 295
BSNT_03448___ 185 ACTTTCT-CTTATATAAACCAAGAGGCGTTATTTCCGCAGCGCAAGATGA 233
|||||.| ||| ||||||||..|.|||||.|||||.||.||..|||||||
BPUM_2049___r 296 ACTTTATGCTT-TATAAACCGCGCGGCGTCATTTCAGCTGCCGAAGATGA 344
BSNT_03448___ 234 TAAAGGACGCAAAGTGGTGACGGACTTTTTTAAAAATATTCCGCAGCGCA 283
|||||||||.||.|||||.||.||.||.|||.|..||.||||||||||..
BPUM_2049___r 345 TAAAGGACGTAAGGTGGTCACAGATTTCTTTGATGATGTTCCGCAGCGTC 394
BSNT_03448___ 284 TTTATCCGATTGGGCGTCTGGACTATGATACGAGCGGTCTTTTGCTTTTA 333
|||||||.||.||.|||.|.||.|||||||||||||| ||||.|||||
BPUM_2049___r 395 TTTATCCAATCGGCCGTTTAGATTATGATACGAGCGG---TTTGATTTTA 441
BSNT_03448___ 334 ---ACCAATGACGGCGAATTCGCCAATAAGCTGATGCACCCTAAGTATGA 380
||.||||||||.|||||.|||.|||||||.|||||.||.||.||.||
BPUM_2049___r 442 ATTACAAATGACGGGGAATTTGCCCATAAGCTCATGCATCCAAAATACGA 491
BSNT_03448___ 381 AATAGACAAAACATACGTGGCGAAGGTGAAAGGAATCCCGCCTAAAGAGC 430
|||.||.||||||||.|..||||||.|.|||||||||||..|.||.||..
BPUM_2049___r 492 AATTGATAAAACATATGCAGCGAAGCTAAAAGGAATCCCATCAAAGGAAT 541
BSNT_03448___ 431 TGCTCAGAAAGCTGGAGCGCGGAATTAGGCTGGA--AGAAGGCAAAACAG 478
||||.||||||||.||....||.||||.|.|.|| |.|| .|||||.|
BPUM_2049___r 542 TGCTTAGAAAGCTAGAAAAAGGGATTATGTTAGATCATAA--AAAAACGG 589
BSNT_03448___ 479 CGCCTGCTAAAGCGAAGCTGCTGTCCTTGGATAAGAAAAAGCAGACAAGC 528
|.|||||....||.||..||||.||..|.|||||...||||||.||..|.
BPUM_2049___r 590 CACCTGCCCGTGCCAAAATGCTTTCGATTGATAAACGAAAGCAAACTTGT 639
BSNT_03448___ 529 ATTATTCAGCTGACGATCCATGAGGGACGCAACAGACAGGTGCGCCGCAT 578
|||.||||..|.||.||.|||||.||..|.||||||||.|||||||||||
BPUM_2049___r 640 ATTGTTCAATTAACCATTCATGAAGGCAGAAACAGACAAGTGCGCCGCAT 689
BSNT_03448___ 579 GTTTGAAGCGATCGGACATGAGGTAATCAAGCTGAAGCGTGAGGAATACG 628
|||||||||||||||.|||||.||..|.|||||.||..|.|||.|.||.|
BPUM_2049___r 690 GTTTGAAGCGATCGGTCATGATGTGTTAAAGCTAAAAAGAGAGCACTATG 739
BSNT_03448___ 629 CGT-------TTTTAAACCTGCGAGGCCTGCACACGGGCGATGCCAGAGA 671
||| |.||.||..|..|||.||.|.|.||.| ||||||
BPUM_2049___r 740 CGTTCCTTCATATTGAAGGTATGAGACCAGGAGACCG-------CAGAGA 782
BSNT_03448___ 672 GCTTACGCCTCACGAAGTAAAAAGGCTCAGAGCACTGGCGGATCACGGTA 721
..|..|.||.||.|||||.||..|.||.|||||..|.||||||||.||.|
BPUM_2049___r 783 ATTGTCTCCACATGAAGTGAAGCGTCTGAGAGCGATTGCGGATCATGGGA 832
BSNT_03448___ 722 AAAACGCTTTCTAA 735
|||.||||||.|||
BPUM_2049___r 833 AAAGCGCTTTTTAA 846
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