Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home About Browser Genes Download Publications

DNA alignment: BSNT_03448 and BPUM_2049

See Amino acid alignment / Visit BSNT_03448 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:58
# Commandline: needle
#    -asequence dna-align/BSNT_03448___rluB.1.24716.seq
#    -bsequence dna-align/BPUM_2049___rluB.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03448___rluB-BPUM_2049___rluB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03448___rluB-BPUM_2049___rluB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03448___rluB
# 2: BPUM_2049___rluB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 864
# Identity:     542/864 (62.7%)
# Similarity:   542/864 (62.7%)
# Gaps:         147/864 (17.0%)
# Score: 1878.0
# 
#
#=======================================

BSNT_03448___      0 --------------------------------------------------      0
                                                                       
BPUM_2049___r      1 ATGGGAAATGGCTTTTTAGCTGAAATTAAACAGACGAATCGCTTATTTTT     50

BSNT_03448___      0 --------------------------------------------------      0
                                                                       
BPUM_2049___r     51 CCACGAATGCTTGTTTGTTTTAAGTCAAGCAAGTAAGATAGTACATGAGG    100

BSNT_03448___      1 -----------ATGGAAAGACTGCAAAAAGTGATTGCTCATGCCGGAGTT     39
                                ||||||.|..|.||.|||||.|||||.||||||||.||.
BPUM_2049___r    101 TGAAAGACAAAATGGAACGTTTACAGAAAGTAATTGCACATGCCGGCGTC    150

BSNT_03448___     40 GCGTCGCGCAGAAAGGCAGAAGAGCTGATTAAAGAAGGAAAAGTAAAGGT     89
                     ||.||..|..|||||||||||||..|.||||||||||||..|||.|..||
BPUM_2049___r    151 GCTTCAAGACGAAAGGCAGAAGAATTAATTAAAGAAGGACGAGTTACCGT    200

BSNT_03448___     90 GAATGG-CAAAGTAGTAACAGAGCTAGGTGTTAAGGTCACCGG----TTC    134
                     .||||| |||| .|||.||.|||||.||.||.||.||    ||    |||
BPUM_2049___r    201 TAATGGTCAAA-CAGTGACTGAGCTCGGAGTAAAAGT----GGGCTCTTC    245

BSNT_03448___    135 TGATCAGATTGAGGTAAACGGGTTAAAGGTTGAACGCGAAGAGCCGGTTT    184
                     .|||.|.|||||.||.|||||.||||||.|||||.|.|||||.|||||||
BPUM_2049___r    246 AGATAAAATTGAAGTCAACGGATTAAAGCTTGAAAGAGAAGAACCGGTTT    295

BSNT_03448___    185 ACTTTCT-CTTATATAAACCAAGAGGCGTTATTTCCGCAGCGCAAGATGA    233
                     |||||.| ||| ||||||||..|.|||||.|||||.||.||..|||||||
BPUM_2049___r    296 ACTTTATGCTT-TATAAACCGCGCGGCGTCATTTCAGCTGCCGAAGATGA    344

BSNT_03448___    234 TAAAGGACGCAAAGTGGTGACGGACTTTTTTAAAAATATTCCGCAGCGCA    283
                     |||||||||.||.|||||.||.||.||.|||.|..||.||||||||||..
BPUM_2049___r    345 TAAAGGACGTAAGGTGGTCACAGATTTCTTTGATGATGTTCCGCAGCGTC    394

BSNT_03448___    284 TTTATCCGATTGGGCGTCTGGACTATGATACGAGCGGTCTTTTGCTTTTA    333
                     |||||||.||.||.|||.|.||.||||||||||||||   ||||.|||||
BPUM_2049___r    395 TTTATCCAATCGGCCGTTTAGATTATGATACGAGCGG---TTTGATTTTA    441

BSNT_03448___    334 ---ACCAATGACGGCGAATTCGCCAATAAGCTGATGCACCCTAAGTATGA    380
                        ||.||||||||.|||||.|||.|||||||.|||||.||.||.||.||
BPUM_2049___r    442 ATTACAAATGACGGGGAATTTGCCCATAAGCTCATGCATCCAAAATACGA    491

BSNT_03448___    381 AATAGACAAAACATACGTGGCGAAGGTGAAAGGAATCCCGCCTAAAGAGC    430
                     |||.||.||||||||.|..||||||.|.|||||||||||..|.||.||..
BPUM_2049___r    492 AATTGATAAAACATATGCAGCGAAGCTAAAAGGAATCCCATCAAAGGAAT    541

BSNT_03448___    431 TGCTCAGAAAGCTGGAGCGCGGAATTAGGCTGGA--AGAAGGCAAAACAG    478
                     ||||.||||||||.||....||.||||.|.|.||  |.||  .|||||.|
BPUM_2049___r    542 TGCTTAGAAAGCTAGAAAAAGGGATTATGTTAGATCATAA--AAAAACGG    589

BSNT_03448___    479 CGCCTGCTAAAGCGAAGCTGCTGTCCTTGGATAAGAAAAAGCAGACAAGC    528
                     |.|||||....||.||..||||.||..|.|||||...||||||.||..|.
BPUM_2049___r    590 CACCTGCCCGTGCCAAAATGCTTTCGATTGATAAACGAAAGCAAACTTGT    639

BSNT_03448___    529 ATTATTCAGCTGACGATCCATGAGGGACGCAACAGACAGGTGCGCCGCAT    578
                     |||.||||..|.||.||.|||||.||..|.||||||||.|||||||||||
BPUM_2049___r    640 ATTGTTCAATTAACCATTCATGAAGGCAGAAACAGACAAGTGCGCCGCAT    689

BSNT_03448___    579 GTTTGAAGCGATCGGACATGAGGTAATCAAGCTGAAGCGTGAGGAATACG    628
                     |||||||||||||||.|||||.||..|.|||||.||..|.|||.|.||.|
BPUM_2049___r    690 GTTTGAAGCGATCGGTCATGATGTGTTAAAGCTAAAAAGAGAGCACTATG    739

BSNT_03448___    629 CGT-------TTTTAAACCTGCGAGGCCTGCACACGGGCGATGCCAGAGA    671
                     |||       |.||.||..|..|||.||.|.|.||.|       ||||||
BPUM_2049___r    740 CGTTCCTTCATATTGAAGGTATGAGACCAGGAGACCG-------CAGAGA    782

BSNT_03448___    672 GCTTACGCCTCACGAAGTAAAAAGGCTCAGAGCACTGGCGGATCACGGTA    721
                     ..|..|.||.||.|||||.||..|.||.|||||..|.||||||||.||.|
BPUM_2049___r    783 ATTGTCTCCACATGAAGTGAAGCGTCTGAGAGCGATTGCGGATCATGGGA    832

BSNT_03448___    722 AAAACGCTTTCTAA    735
                     |||.||||||.|||
BPUM_2049___r    833 AAAGCGCTTTTTAA    846


#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.