Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

DNA alignment: BSNT_03446 and BPUM_2048

See Amino acid alignment / Visit BSNT_03446 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:58
# Commandline: needle
#    -asequence dna-align/BSNT_03446___resA.1.24716.seq
#    -bsequence dna-align/BPUM_2048___resA.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03446___resA-BPUM_2048___resA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03446___resA-BPUM_2048___resA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03446___resA
# 2: BPUM_2048___resA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 551
# Identity:     386/551 (70.1%)
# Similarity:   386/551 (70.1%)
# Gaps:          31/551 ( 5.6%)
# Score: 1258.0
# 
#
#=======================================

BSNT_03446___      1 ATGAAGAAAAAAAGGCGTTTATTCATTCGGACCGGCATCCTTCTCGTTTT     50
                        |.|||||||||.||.||.|||||.|||||.|||||.||.|||||..|
BPUM_2048___r      1 ---ATGAAAAAAAGACGGTTTTTCATACGGACGGGCATTCTCCTCGTGAT     47

BSNT_03446___     51 AATCTGC-GCACTCGGCTATACCATTTACAACGCTGTATTTGCCGGCAAA     99
                     ..| ||| |||||..|.||||||||.||.|||.|.|||||||||....||
BPUM_2048___r     48 GCT-TGCTGCACTATGTTATACCATGTATAACTCAGTATTTGCCAAACAA     96

BSNT_03446___    100 GAGAGTATATCCGAAGGGTCCGACGCACCGAATTTTGTCCTTGAGGATAC    149
                     |||.|..|....|||||.||....||.||.||.|||||||||.|  ||..
BPUM_2048___r     97 GAGCGGGTCAAAGAAGGATCTATTGCGCCAAACTTTGTCCTTCA--ATCT    144

BSNT_03446___    150 G--AATGGGAAACGTATCGAGCTCAGTGACTTAAAAGGGAAAGGTGTTTT    197
                     |  .|||||.||||.||.||.||.|..|||||||||||.|||||.|||||
BPUM_2048___r    145 GTAGATGGGGAACGGATTGAACTAAAGGACTTAAAAGGCAAAGGCGTTTT    194

BSNT_03446___    198 TTTGAATTTCTGGGGTACATGGTGTGAACCGTGCAAAAAAGAGTTTCCTT    247
                     |.|.|||||.|||||.||.|||||||..||.||.|||.||||.||.||||
BPUM_2048___r    195 TCTTAATTTTTGGGGGACCTGGTGTGGTCCATGTAAACAAGAATTCCCTT    244

BSNT_03446___    248 ATATGGCAAACCAATAT-AAGCATTTTAAAAG-CCAAGGTGTTGAAATTG    295
                     |.||||||||.|||||| |||  |.||.||.| .|..|||||.|||||||
BPUM_2048___r    245 ACATGGCAAATCAATATGAAG--TGTTCAAGGATCGCGGTGTGGAAATTG    292

BSNT_03446___    296 TCGCTGTAAATGTTGGGGAGTCAAAGATAGCAGTACATAATTTTATGAAA    345
                     |.||.||.|||||||..||.||.||.||.||.||..|.|||||||||.|.
BPUM_2048___r    293 TTGCAGTCAATGTTGCAGAATCCAATATTGCCGTGAAGAATTTTATGGAG    342

BSNT_03446___    346 TCCTACGGAGTCAATTTCCCGGTTGTTCTGGATACAGATCGCCAAGTGCT    395
                     |||||.||.||.|||||.||.||||...||||.|.||||||.||||||..
BPUM_2048___r    343 TCCTATGGCGTGAATTTTCCTGTTGCCATGGACAAAGATCGTCAAGTGAC    392

BSNT_03446___    396 TGATGCCTATGACGTAT--CTCCGCTTCCGACAACCTTTTTGATCAATCC    443
                     .||.||.|||||  |||  |.|||||.||.||.||.|||||.||.|||||
BPUM_2048___r    393 AGAGGCATATGA--TATTACGCCGCTGCCAACCACATTTTTAATTAATCC    440

BSNT_03446___    444 GGAAGGAAAAGTTGTCAAGGTGGTGACCGGCACTATGACAGAAAG-CATG    492
                     .|||||.||.||..||||.||..|.|..||.||.|||||||||.| .|||
BPUM_2048___r    441 TGAAGGCAAGGTAATCAAAGTCATAAAGGGAACCATGACAGAACGTAATG    490

BSNT_03446___    493 ATACACGAATATATGAATCTCATAAAACCCGGAGAGACTTCGGGATGA--    540
                      |..|.||||||||||||.|.||.|||||     |.|    |||.|.|  
BPUM_2048___r    491 -TCTATGAATATATGAATTTGATTAAACC-----AAA----GGGGTCATA    530

BSNT_03446___    540 -    540
                      
BPUM_2048___r    531 G    531


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.