Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03439 and BPUM_2044
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:57
# Commandline: needle
# -asequence dna-align/BSNT_03439___resE.1.24716.seq
# -bsequence dna-align/BPUM_2044___resE.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03439___resE-BPUM_2044___resE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03439___resE-BPUM_2044___resE.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03439___resE
# 2: BPUM_2044___resE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1840
# Identity: 1305/1840 (70.9%)
# Similarity: 1305/1840 (70.9%)
# Gaps: 128/1840 ( 7.0%)
# Score: 4343.5
#
#
#=======================================
BSNT_03439___ 1 ATGAAATTTTGGAAAAGCGTAGTAGGCAAGCTGTGGTTTACGATCCT-TT 49
||||||.|.||||||||.||.||.||.|||||.|||||.||.||.|| ||
BPUM_2044___r 1 ATGAAACTGTGGAAAAGTGTCGTTGGAAAGCTATGGTTAACCATTCTCTT 50
BSNT_03439___ 50 CACTCGTCTTGATCGTATTGTTCATTTTAACGGTTCTTTTGCTGGAGTTT 99
| ||.|||.|.|||||.||.|..||||||||.||.|||.|..|.|||||.
BPUM_2044___r 51 C-CTTGTCCTAATCGTTTTATCTATTTTAACCGTGCTTCTTTTAGAGTTC 99
BSNT_03439___ 100 ATTGAAAACTACCATGTGGAAGAAGCTGAGAATGATTTAACACAGCTTGC 149
||||||||.||||||||.||||||||..||...||||||||.||..|.||
BPUM_2044___r 100 ATTGAAAATTACCATGTAGAAGAAGCAAAGTCAGATTTAACGCAAATGGC 149
BSNT_03439___ 150 GAATAAAGTTGCTGTCATCCTAGAAAATCACGAGGACCAGGCACTGGCAA 199
.||||||||.||.|||||..||||||..||.||.||.||..|.||.||||
BPUM_2044___r 150 AAATAAAGTGGCAGTCATTTTAGAAAGCCATGACGATCAATCGCTCGCAA 199
BSNT_03439___ 200 GGTCAATCACTTGGGAGCTCGCTGATAACTTAACAAGCATTGCCATCATC 249
||||.||.||.|..|||||.|||||.||.||.||.||.|||||.||.|||
BPUM_2044___r 200 GGTCGATTACATCAGAGCTTGCTGACAAATTGACGAGTATTGCGATTATC 249
BSNT_03439___ 250 CAGGATGA--GA--AGAACCACTGGTATTC-TCCGAATGATAAAAATCG- 293
||.||.|| || || |.|||||||| ||.|| ||||..||
BPUM_2044___r 250 CAAGAGGACGGACTAG----AGTGGTATTCGTCTGA-----AAAAGACGG 290
BSNT_03439___ 294 -------CCTGTCGTCTATAACGGTTGAGCAAAT--ACAGCATGACAAAG 334
|||| ||..||.||.| .|.||||| | ||| .||||..|
BPUM_2044___r 291 GAAGCTACCTG-CGATTACAAAG---AAACAAATTGA-AGC-GGACAGTG 334
BSNT_03439___ 335 ACTTAAATAAAGCTCTCCAAGACCATAAAAAAGTAAGCAAACGGACGGGA 384
|..|.|||.||||.||..||||.|.|||||||.|.||.|||||..|.|.|
BPUM_2044___r 335 ATCTGAATCAAGCACTAAAAGATCGTAAAAAAATTAGTAAACGTGCTGAA 384
BSNT_03439___ 385 CTGAGCGATACAGACACGGATA---ATGAACGCCTGATTGTAGGTGTCCC 431
|..| ||.|||.||...||| |||||||..|..|.||.|||||.||
BPUM_2044___r 385 CCAA---ATGCAGGCAATCATAAAGATGAACGAATTGTCGTCGGTGTTCC 431
BSNT_03439___ 432 GTATGAAAAAGACGGAAAGAAAGGCATGGTCTTTTTATCCCAGTCTTTGC 481
.|.|||...|.||||.||.|||||||||||||||.|.||.||.||.||.|
BPUM_2044___r 432 ATTTGAGGCAAACGGCAAAAAAGGCATGGTCTTTCTTTCTCAATCATTAC 481
BSNT_03439___ 482 TTGCCGTTAAAG-ATACAACAAAACATACGACCCGCTATATTTTTCTTGC 530
|.|||| ||.|| |.||||||||.||||||||.||.|||||.||.||.||
BPUM_2044___r 482 TCGCCG-TAGAGCAAACAACAAAGCATACGACGCGTTATATCTTCCTAGC 530
BSNT_03439___ 531 CGCTGGAATTGCGATTGTGCTGACCACATTTTTCGCATTCTTTTTATCAA 580
.||.||.|||||.|||||..|.|||||..|.|||||.|||||.|||||||
BPUM_2044___r 531 AGCCGGTATTGCCATTGTTTTAACCACTATATTCGCGTTCTTCTTATCAA 580
BSNT_03439___ 581 -GCAGGGTCACGTACCCTCTCCGAAAAATGAGAGAAGGTGCGCAGGATTT 629
|| |.|||||.||.|||||..||||.||||.|||.||.|||||||||.|
BPUM_2044___r 581 CGC-GTGTCACCTATCCTCTTAGAAAGATGAAAGAGGGAGCGCAGGATCT 629
BSNT_03439___ 630 GGCGAAGGGCAAGTTCGATACAAAAATCCCGATTTTAACTCAGGATGAAA 679
||||||.||.||.||.||||||||.||.|||||.|||||.||.||.||||
BPUM_2044___r 630 GGCGAAAGGGAAATTTGATACAAAGATTCCGATATTAACGCAAGACGAAA 679
BSNT_03439___ 680 TCGGTGAACTGGCGACCGCTTTTAATCAAATGGGCCGGCAGCTTAACTTT 729
|.||.||||||||.|.|||.|||||||||||||||..||||||||..|||
BPUM_2044___r 680 TTGGAGAACTGGCCATCGCCTTTAATCAAATGGGCAAGCAGCTTACATTT 729
BSNT_03439___ 730 CATATCAATGCGCTCAATCAAGAAAAAGAGCAGCTTTCTAACATTTTGAG 779
|||||||..||..|.||||||||||||||.||..|.||.|||||.||.||
BPUM_2044___r 730 CATATCACAGCCTTAAATCAAGAAAAAGAACATTTATCCAACATATTAAG 779
BSNT_03439___ 780 CAGTATGGCTGACGGGGTTATTACCATTAATATTGACGGTACGATTCTTG 829
|||||||||.||.|||||.||.|||||.||||||||.||.|||||.||..
BPUM_2044___r 780 CAGTATGGCCGATGGGGTCATCACCATCAATATTGATGGAACGATCCTCA 829
BSNT_03439___ 830 TGACCAACCCGCCGGCTGAACGTTTTCTT-CAGGCTTGGTATTATGAACA 878
||||.||.||.||.||.||||| .||||| |||||.||||||||.||.||
BPUM_2044___r 830 TGACGAATCCTCCTGCAGAACG-ATTCTTGCAGGCATGGTATTACGAGCA 878
BSNT_03439___ 879 GAACATGAATATCAAAGAAGGCGACAACCTTCCGCCTGAAGCAAAAGAGC 928
.||.|||||.||||||||.||.||..|.||.||.||.||||||..|||.|
BPUM_2044___r 879 AAATATGAAGATCAAAGATGGAGATGAACTGCCTCCAGAAGCACGAGAAC 928
BSNT_03439___ 929 TGTTTCAAAACGCTGTTAGCACTGAAAAAGAACAAATGATTGAGATGACG 978
|||||||.|..||.||.|||||.||||||||.||||||||.||..|.||.
BPUM_2044___r 929 TGTTTCATACAGCCGTCAGCACGGAAAAAGAGCAAATGATCGAAGTCACA 978
BSNT_03439___ 979 CTTCAAGGCAGATCATGGGTGCTTTTGATGTCGCCGCTTTATGCGGAATC 1028
||.|||||..|..|.|||||.|||.|.|||||.||||||||| ||||
BPUM_2044___r 979 CTGCAAGGGCGTACTTGGGTTCTTCTTATGTCTCCGCTTTAT----AATC 1024
BSNT_03439___ 1029 ----GCACGTCAGAGGAGCGGTTGCCGTACTGCGTGACATGACAGAAGAA 1074
|.||||.||||||||.|||||.||.||.|||||.||||||||.|||
BPUM_2044___r 1025 AGCAGGACGTTAGAGGAGCAGTTGCAGTCCTTCGTGATATGACAGAGGAA 1074
BSNT_03439___ 1075 CGCCGCCTTGATAAGCTGCGGGAGGACTTTATCGCAAATGTCAGTCATGA 1124
||..|.||||||||||||.|..|.||||||||.||.||||||||||||||
BPUM_2044___r 1075 CGAAGACTTGATAAGCTGAGAAAAGACTTTATTGCCAATGTCAGTCATGA 1124
BSNT_03439___ 1125 GCTGAGAACACCGATTTCCATGCTTCAGGGATACAGTGAAGCAATTGTCG 1174
.||..|.||.||.|||.|.|||||.||.||.||.|||||.||.|||.|.|
BPUM_2044___r 1125 ACTTCGTACTCCAATTGCTATGCTGCAAGGGTATAGTGAGGCGATTATAG 1174
BSNT_03439___ 1175 ATGACATTGCAAGCTCTGAAGAAGACCGGAAAGAAATTGCCCAAATCATT 1224
||||.||.|||.||||.|||||.||...||||||.|||||.|||||.|||
BPUM_2044___r 1175 ATGATATCGCAGGCTCAGAAGAGGAAAAGAAAGAGATTGCGCAAATTATT 1224
BSNT_03439___ 1225 TATGACGAATCACTCCGAATGGGCCGTTTAGTTAATGATTTGCTTGATTT 1274
||.||||||||.||.||||||||.|||.|.||.|||||..|.||.||..|
BPUM_2044___r 1225 TACGACGAATCGCTTCGAATGGGACGTCTTGTGAATGACCTTCTAGACCT 1274
BSNT_03439___ 1275 AGCCCGAATGGAATCAGGCCATACAGGCTTACATTATGAA---AAAATCA 1321
|||..||||||||.|.||.|||| ||||| .|||| ..|||||
BPUM_2044___r 1275 AGCGAGAATGGAAGCTGGTCATA-----TTACA--CTGAATCTCGAATCA 1317
BSNT_03439___ 1322 ATGTGA-----ATGAGTTTTTAGAAAAGATCATT--CGGAAGTTTTCCGG 1364
|.| || |.|||.|....||.||||| || ||.||||||...||
BPUM_2044___r 1318 ACG-GATACAGAAGAGCTGACCGAGAAGAT--TTACCGCAAGTTTCTTGG 1364
BSNT_03439___ 1365 TGTTGCGAAAGAAAAAAATATTGCTTTACA-AAATGACATTTCTCTCACA 1413
|.|.||.||||||||..|..|||.|.| || |.||||.|| ||| |
BPUM_2044___r 1365 TATAGCAAAAGAAAAGCAAGTTGATCT-CACATATGATAT-----TCA-A 1407
BSNT_03439___ 1414 GAAGAGGAA------TTTATGCTTGATGAAGACAAGATGGAGCAGGTATT 1457
|..||.||| |||.|.||.|||...||.||||||||||||||.||
BPUM_2044___r 1408 GTGGATGAACCGCACTTTGTACTCGATCCGGATAAGATGGAGCAGGTGTT 1457
BSNT_03439___ 1458 TACCAATTTGATTGATAACGCGCTGCGGCATACTTCATCCGGTGGC--AG 1505
|||.|||.|.|||||||||||..|.||.|||| ||.|.|..||| ||
BPUM_2044___r 1458 TACGAATCTCATTGATAACGCCATTCGTCATA---CACCTGAGGGCGGAG 1504
BSNT_03439___ 1506 TGTCTC-CATTTCAGTCCATTCTGTG--AAGGATGGATTGAAAATTGATA 1552
.|..|| |.|.||.||.||.||.||| ||| .||.||||||||.|||.
BPUM_2044___r 1505 AGGTTCACTTCTCGGTTCAATCAGTGGAAAG--CGGTTTGAAAATGGATG 1552
BSNT_03439___ 1553 TCAAAGACTCCGGGTCCGGCATACCGGAAGAAGATCTGCCATTTATCTTT 1602
|.|||||.||.||...|||.||.||.|||||.||||||||||||||.||.
BPUM_2044___r 1553 TGAAAGATTCAGGAAGCGGAATCCCAGAAGAGGATCTGCCATTTATTTTC 1602
BSNT_03439___ 1603 GAGCGGTTTTATAAGGCAGATAAAGCGCGGACAAG-GGGCAGAGCAGGAA 1651
||.||.||.|||||.||.|||||.||..|.||||| |||| |..|.||||
BPUM_2044___r 1603 GAACGTTTCTATAAAGCGGATAAGGCCAGAACAAGAGGGC-GTTCTGGAA 1651
BSNT_03439___ 1652 CCGGGTTAGGGCTGGCTATCGTTAAAAATATCGTGGAAGCCCA-CAACGG 1700
|.||..|.||.||.||.||.||.||.||.|||||.|||||.|| ||| ||
BPUM_2044___r 1652 CTGGACTTGGTCTTGCAATTGTGAAGAACATCGTAGAAGCACATCAA-GG 1700
BSNT_03439___ 1701 CT-CAATCACTGTGCAC--AGC----CGAATAGATAAAGGAACAACA-TT 1742
|| ||.||| ||||| ||| || |.||..||.|| ||| ||
BPUM_2044___r 1701 CTCCATTCA---TGCACATAGCAAAGCG----GGTACTGGTAC-ACATTT 1742
BSNT_03439___ 1743 TACTTTTTATATTCCGACAAAA---CGGTAA--------- 1770
|||.|||||||||||||.|||| |.|.||
BPUM_2044___r 1743 TACCTTTTATATTCCGAGAAAAAAGCAGGAACTCGTCTAA 1782
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