Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03426 and BPUM_2035

See Amino acid alignment / Visit BSNT_03426 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:57
# Commandline: needle
#    -asequence dna-align/BSNT_03426___recQ.1.24716.seq
#    -bsequence dna-align/BPUM_2035___recQ.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03426___recQ-BPUM_2035___recQ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03426___recQ-BPUM_2035___recQ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03426___recQ
# 2: BPUM_2035___recQ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1704
# Identity:     974/1704 (57.2%)
# Similarity:   974/1704 (57.2%)
# Gaps:         408/1704 (23.9%)
# Score: 2495.0
# 
#
#=======================================

BSNT_03426___      1 ATGACTAAATTACAGCAAACGTT------ATATCAGTTTTTTGGTTTTAC     44
                     |||..|||..|.||.||.|||.|      |||      .|||||      
BPUM_2035___r      1 ATGGATAAGCTTCATCAGACGCTCATGCGATA------CTTTGG------     38

BSNT_03426___     45 TTCC--------TTTAAAAAAGGGCAGCAGGACATTATTGAAAGCATACT     86
                       ||        ||||||..|||.||..|||||||||||..|||..|.||
BPUM_2035___r     39 --CCATGGCACATTTAAATCAGGTCAAGAGGACATTATTCGAAGTGTGCT     86

BSNT_03426___     87 -CAGCGGGAAGGATACCATTGCAATGCTCCCGACTGGGGGAGGGAAATCG    135
                      ||.| ..||.||.||..||||.|||||.||.|||||.|||||.||.||.
BPUM_2035___r     87 GCATC-AAAAAGACACGGTTGCCATGCTGCCTACTGGTGGAGGCAAGTCA    135

BSNT_03426___    136 CTTTGCTACCAGCTGCCTGGTTATATGCTTGACGGCATGGTATTAATCGT    185
                     ||||||||.||..|.||.|||||||||...|||||..|.||..|.|||.|
BPUM_2035___r    136 CTTTGCTATCAAATTCCCGGTTATATGACAGACGGGTTAGTTCTGATCAT    185

BSNT_03426___    186 TTCTCCACTGCTTTCTTTAATGGAGGATCAGGTGCAGCAGCTCAAAGCCC    235
                     |||.||.||..|.||..||||||||||.||.||..|.|...|.|||...|
BPUM_2035___r    186 TTCGCCGCTTTTATCGCTAATGGAGGACCAAGTCGAACGAATGAAAATGC    235

BSNT_03426___    236 GGGGGGAAAAGCGTGCTGCAGCTTTGAACAGCA---TG-CTTAACAGGCA    281
                     |.||||||||.||.|..||.||..|.|||||||   || |||    ..||
BPUM_2035___r    236 GCGGGGAAAAACGAGTGGCGGCACTTAACAGCACATTGACTT----TTCA    281

BSNT_03426___    282 GGAAA---GACA----ATTTGTTTTAGAACATATT--CATCGATATAAAT    322
                     |||||   ||||    |||.|       .||| ||  |||| ||||||| 
BPUM_2035___r    282 GGAAAGGCGACATATCATTCG-------GCAT-TTGCCATC-ATATAAA-    321

BSNT_03426___    323 TTTTGTACTTGT--CTCCTGAAGCTTT----ACAGTCTCCATATG-TATT    365
                      |||.||.||||  |.|||||.||.||    .|||     |.||| |.||
BPUM_2035___r    322 -TTTCTATTTGTCGCACCTGAGGCATTGATGTCAG-----AAATGCTCTT    365

BSNT_03426___    366 GGAA------AAATTGAAAAGCGTCCCGATCAGCCTATTTGTTATTGACG    409
                     .|||      ||||.|  |.||||    ||..|.||.|||||..|.||.|
BPUM_2035___r    366 AGAACAGCTCAAATCG--ATGCGT----ATTGGTCTGTTTGTCGTCGATG    409

BSNT_03426___    410 AAGCGCATTGTATTTCTGAATGGGGACACGACTTCAGGCCTGATTATTCA    459
                     |||||||||||||.||.||||||||.||.||.|||.|.|||||.|||||.
BPUM_2035___r    410 AAGCGCATTGTATATCAGAATGGGGGCATGATTTCCGTCCTGAATATTCG    459

BSNT_03426___    460 AAGCTCGGACAGCTGAGAAAAAAACTTGGTCACCCGCCCGTTCTGGCAT-    508
                     |||||.|||.|...||||.||....|.|||||.||      |.||||.| 
BPUM_2035___r    460 AAGCTTGGAGAATGGAGAGAAGCGTTAGGTCATCC------TGTGGCTTT    503

BSNT_03426___    509 -----TGACCGCCACGGCTACAAAGGAAACGCTGCAAGA---TGT-CATG    549
                          |.||.||.||.||.|||||..|||||||..||||   ||| ||  
BPUM_2035___r    504 AGCTCTTACAGCTACAGCAACAAAACAAACGCTAAAAGATACTGTGCA--    551

BSNT_03426___    550 AACCTGCTGGAG-CTGCAGCATGCTGTACGCCA---TCTCA-----ACTC    590
                     |||  ||| .|| .|.|||||        ||||   |.|||     |.||
BPUM_2035___r    552 AAC--GCT-AAGATTACAGCA--------GCCAGACTTTCATATTCATTC    590

BSNT_03426___    591 AGTCAACCGCCCAAACATCGCACTGAGGGTTGAAAATGCGGTGGA--TAC    638
                     .|||||.|||||.|||||.|| ||.||   |.|||        ||  |||
BPUM_2035___r    591 CGTCAATCGCCCGAACATTGC-CTTAG---TCAAA--------GAAGTAC    628

BSNT_03426___    639 TGCCGAA-----------AAAATAGATA-GGGTCATTCAGCTGGTTGAAA    676
                       .||||           ||||.|||.| |||.||||.||||.||.||..
BPUM_2035___r    629 --ACGAAACGAAAGAAGCAAAAGAGAAACGGGCCATTGAGCTTGTAGATT    676

BSNT_03426___    677 ACCTGCAAGGTCCGGGAATTGTTTATTGTCCGACACGG-AAATGGGCCGA    725
                     .|||||||||.||.||.|||.|||||||.|||||.||| |||| |.|.||
BPUM_2035___r    677 TCCTGCAAGGACCAGGCATTATTTATTGCCCGACCCGGCAAAT-GACAGA    725

BSNT_03426___    726 GGAATTAGCGGGTGAAATTAAAAGCAAAA---CGAGCAGCAGAGCCGACT    772
                     .|||.|.||.....|.||.|||  |||||   |.|.|||| |.|..||.|
BPUM_2035___r    726 AGAACTTGCTCTCTATATGAAA--CAAAAAACCAATCAGC-GTGTTGAGT    772

BSNT_03426___    773 TTTACCATGGCGGTTTGGAGTCAGGGGACCGGATTTTAATTCAGCAGCAG    822
                     ||||.||||||||..||||..|.||.|||||.||..|.|||||||||||.
BPUM_2035___r    773 TTTATCATGGCGGAATGGATGCGGGAGACCGTATGCTTATTCAGCAGCAA    822

BSNT_03426___    823 TTTATTCATAACCAGCTTGATGTGATATGTTGTACGAATGCGTTTGGAAT    872
                     ||||||..|.|.|||||||||.|.||.||.|||||||.|||.|||||.||
BPUM_2035___r    823 TTTATTAGTGATCAGCTTGATCTCATTTGCTGTACGAGTGCTTTTGGCAT    872

BSNT_03426___    873 GGGTGTCGATAAACCCGATATCAGATATGTGATTCATTTTCACCTCCCGC    922
                     |||..|.||||||.|..||||..|||.|||.||||||.|...||..||||
BPUM_2035___r    873 GGGAATTGATAAAGCAAATATTCGATTTGTCATTCATATGAGCCCACCGC    922

BSNT_03426___    923 AGACGGCAGAAGCTTTTATGCAGGAAATCGGCAGAGCGGGCCGTGATGGA    972
                     |..||...|||||.||||||||.||.||.||.||||||||..|.||||||
BPUM_2035___r    923 AATCGATTGAAGCATTTATGCAAGAGATTGGAAGAGCGGGAAGGGATGGA    972

BSNT_03426___    973 AAGCCGAGTGTCAGCA----TTTTGCTGCGGGCGCCAGGGGATTTTGAAT   1018
                     ||....|||||.||||    |||...|.|.|    .||.||||...|||.
BPUM_2035___r    973 AAAAACAGTGTGAGCATTCTTTTATATACAG----AAGAGGATGCAGAAA   1018

BSNT_03426___   1019 TGCAGGAACAGATTATC----CAGATGGAGAGTGTCACAGCTGAAGAAAT   1064
                     |.|||.||||..|.|||    ||||||||   |.|.|| |.|..||||||
BPUM_2035___r   1019 TTCAGCAACACTTGATCCAAGCAGATGGA---TTTGAC-GATCCAGAAAT   1064

BSNT_03426___   1065 CGCCGACGTAATCCGTGT-CCTAG---AAAAGACGGAGGAGCGG------   1104
                             |.||  .|.| |||||   ||..|||..|...||.|      
BPUM_2035___r   1065 --------TGAT--TTCTACCTAGCACAACTGACACAAATGCAGATAAAT   1104

BSNT_03426___   1105 GATGAGAGAAGGCTGCGTG-ACGTATTA------------CTTCAGTATG   1141
                     |||||.|.||...|.|||| ||| ||||            ||||||    
BPUM_2035___r   1105 GATGAAAAAAAATTACGTGAACG-ATTAATGGAAACAGGCCTTCAG----   1149

BSNT_03426___   1142 GCGTCGGAGAGACACAGGCCCGTATGATG----ATTCATCTCTTTATGCA   1187
                             |||||||..||..|.|||.||    ||| ||..|.|.|||||
BPUM_2035___r   1150 --------GAGACACGTGCAAGAATGCTGACGCATT-ATTACATGATGCA   1190

BSNT_03426___   1188 GG----------------GGAAAACATCAGTTGAA-CTGATGAAGAAAGA   1220
                     .|                ||.||.|.|.|  .||| ||.|  |||||  |
BPUM_2035___r   1191 TGAGTCCGAGCAGCGCCCGGCAATCCTTA--AGAATCTAA--AAGAA--A   1234

BSNT_03426___   1221 AATTTCATATCGCATGGAGCTG----------AAGCTG-GAAAAAATGCA   1259
                     ||||.||        ||| |.|          |||||| ||||       
BPUM_2035___r   1235 AATTACA--------GGA-CAGACAAACAGAAAAGCTGAGAAA-------   1268

BSNT_03426___   1260 CCGTGTATCATTTT--TGCTTCAGCG--TGACGG-------CTGTTTAAG   1298
                      .||||..||.|||  .|    ||||  |.|.||       |||.||.||
BPUM_2035___r   1269 -GGTGTGGCAATTTAAAG----AGCGGATCATGGATCATAACTGCTTTAG   1313

BSNT_03426___   1299 GCAGGCACTGTTAACCTACTT---CGA------TGAATCATAC-GAGC--   1336
                     .||..|.||||||.|.|||||   |||      || ||||.|| ||||  
BPUM_2035___r   1314 ACAATCTCTGTTATCATACTTTCACGAACAGATTG-ATCAAACAGAGCGC   1362

BSNT_03426___   1337 -------CTGATGACGGAAACCTCCCGTGCTGTTCACATTGCGGTTTTGA   1379
                            |||||||            .|||||.||...|||||     ||
BPUM_2035___r   1363 GCGTCCTCTGATGA------------TTGCTGCTCTTCTTGCG-----GA   1395

BSNT_03426___   1380 TTTATCCT---TG--TATGAACTAAAAGGGGCACGGAGTAA-AATGGCGC   1423
                     .|.|.|||   ||  ||||||..|||||           || |||     
BPUM_2035___r   1396 CTGAACCTGTCTGATTATGAAAAAAAAG-----------AACAAT-----   1429

BSNT_03426___   1424 CATTAGACAGCTGGAGTTCGGAATTG---CACCGGATATTCAGCTTGCAG   1470
                     ||||.|  |||||.|    .|||.||   |||.|||            ||
BPUM_2035___r   1430 CATTGG--AGCTGAA----TGAAATGAAACACTGGA------------AG   1461

BSNT_03426___   1471 ACTGTAGGTGAGCTG-------------AACTGA----------------   1491
                     |||||      ||||             |.||||                
BPUM_2035___r   1462 ACTGT------GCTGGATCGTATGTTTCATCTGACAAAAGAGGCGCAGCA   1505

BSNT_03426___   1491 ----   1491
                         
BPUM_2035___r   1506 TTGA   1509


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