Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03426 and BPUM_2035
See
Amino acid alignment /
Visit
BSNT_03426 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:57
# Commandline: needle
# -asequence dna-align/BSNT_03426___recQ.1.24716.seq
# -bsequence dna-align/BPUM_2035___recQ.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03426___recQ-BPUM_2035___recQ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03426___recQ-BPUM_2035___recQ.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03426___recQ
# 2: BPUM_2035___recQ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1704
# Identity: 974/1704 (57.2%)
# Similarity: 974/1704 (57.2%)
# Gaps: 408/1704 (23.9%)
# Score: 2495.0
#
#
#=======================================
BSNT_03426___ 1 ATGACTAAATTACAGCAAACGTT------ATATCAGTTTTTTGGTTTTAC 44
|||..|||..|.||.||.|||.| ||| .|||||
BPUM_2035___r 1 ATGGATAAGCTTCATCAGACGCTCATGCGATA------CTTTGG------ 38
BSNT_03426___ 45 TTCC--------TTTAAAAAAGGGCAGCAGGACATTATTGAAAGCATACT 86
|| ||||||..|||.||..|||||||||||..|||..|.||
BPUM_2035___r 39 --CCATGGCACATTTAAATCAGGTCAAGAGGACATTATTCGAAGTGTGCT 86
BSNT_03426___ 87 -CAGCGGGAAGGATACCATTGCAATGCTCCCGACTGGGGGAGGGAAATCG 135
||.| ..||.||.||..||||.|||||.||.|||||.|||||.||.||.
BPUM_2035___r 87 GCATC-AAAAAGACACGGTTGCCATGCTGCCTACTGGTGGAGGCAAGTCA 135
BSNT_03426___ 136 CTTTGCTACCAGCTGCCTGGTTATATGCTTGACGGCATGGTATTAATCGT 185
||||||||.||..|.||.|||||||||...|||||..|.||..|.|||.|
BPUM_2035___r 136 CTTTGCTATCAAATTCCCGGTTATATGACAGACGGGTTAGTTCTGATCAT 185
BSNT_03426___ 186 TTCTCCACTGCTTTCTTTAATGGAGGATCAGGTGCAGCAGCTCAAAGCCC 235
|||.||.||..|.||..||||||||||.||.||..|.|...|.|||...|
BPUM_2035___r 186 TTCGCCGCTTTTATCGCTAATGGAGGACCAAGTCGAACGAATGAAAATGC 235
BSNT_03426___ 236 GGGGGGAAAAGCGTGCTGCAGCTTTGAACAGCA---TG-CTTAACAGGCA 281
|.||||||||.||.|..||.||..|.||||||| || ||| ..||
BPUM_2035___r 236 GCGGGGAAAAACGAGTGGCGGCACTTAACAGCACATTGACTT----TTCA 281
BSNT_03426___ 282 GGAAA---GACA----ATTTGTTTTAGAACATATT--CATCGATATAAAT 322
||||| |||| |||.| .||| || |||| |||||||
BPUM_2035___r 282 GGAAAGGCGACATATCATTCG-------GCAT-TTGCCATC-ATATAAA- 321
BSNT_03426___ 323 TTTTGTACTTGT--CTCCTGAAGCTTT----ACAGTCTCCATATG-TATT 365
|||.||.|||| |.|||||.||.|| .||| |.||| |.||
BPUM_2035___r 322 -TTTCTATTTGTCGCACCTGAGGCATTGATGTCAG-----AAATGCTCTT 365
BSNT_03426___ 366 GGAA------AAATTGAAAAGCGTCCCGATCAGCCTATTTGTTATTGACG 409
.||| ||||.| |.|||| ||..|.||.|||||..|.||.|
BPUM_2035___r 366 AGAACAGCTCAAATCG--ATGCGT----ATTGGTCTGTTTGTCGTCGATG 409
BSNT_03426___ 410 AAGCGCATTGTATTTCTGAATGGGGACACGACTTCAGGCCTGATTATTCA 459
|||||||||||||.||.||||||||.||.||.|||.|.|||||.|||||.
BPUM_2035___r 410 AAGCGCATTGTATATCAGAATGGGGGCATGATTTCCGTCCTGAATATTCG 459
BSNT_03426___ 460 AAGCTCGGACAGCTGAGAAAAAAACTTGGTCACCCGCCCGTTCTGGCAT- 508
|||||.|||.|...||||.||....|.|||||.|| |.||||.|
BPUM_2035___r 460 AAGCTTGGAGAATGGAGAGAAGCGTTAGGTCATCC------TGTGGCTTT 503
BSNT_03426___ 509 -----TGACCGCCACGGCTACAAAGGAAACGCTGCAAGA---TGT-CATG 549
|.||.||.||.||.|||||..|||||||..|||| ||| ||
BPUM_2035___r 504 AGCTCTTACAGCTACAGCAACAAAACAAACGCTAAAAGATACTGTGCA-- 551
BSNT_03426___ 550 AACCTGCTGGAG-CTGCAGCATGCTGTACGCCA---TCTCA-----ACTC 590
||| ||| .|| .|.||||| |||| |.||| |.||
BPUM_2035___r 552 AAC--GCT-AAGATTACAGCA--------GCCAGACTTTCATATTCATTC 590
BSNT_03426___ 591 AGTCAACCGCCCAAACATCGCACTGAGGGTTGAAAATGCGGTGGA--TAC 638
.|||||.|||||.|||||.|| ||.|| |.||| || |||
BPUM_2035___r 591 CGTCAATCGCCCGAACATTGC-CTTAG---TCAAA--------GAAGTAC 628
BSNT_03426___ 639 TGCCGAA-----------AAAATAGATA-GGGTCATTCAGCTGGTTGAAA 676
.|||| ||||.|||.| |||.||||.||||.||.||..
BPUM_2035___r 629 --ACGAAACGAAAGAAGCAAAAGAGAAACGGGCCATTGAGCTTGTAGATT 676
BSNT_03426___ 677 ACCTGCAAGGTCCGGGAATTGTTTATTGTCCGACACGG-AAATGGGCCGA 725
.|||||||||.||.||.|||.|||||||.|||||.||| |||| |.|.||
BPUM_2035___r 677 TCCTGCAAGGACCAGGCATTATTTATTGCCCGACCCGGCAAAT-GACAGA 725
BSNT_03426___ 726 GGAATTAGCGGGTGAAATTAAAAGCAAAA---CGAGCAGCAGAGCCGACT 772
.|||.|.||.....|.||.||| ||||| |.|.|||| |.|..||.|
BPUM_2035___r 726 AGAACTTGCTCTCTATATGAAA--CAAAAAACCAATCAGC-GTGTTGAGT 772
BSNT_03426___ 773 TTTACCATGGCGGTTTGGAGTCAGGGGACCGGATTTTAATTCAGCAGCAG 822
||||.||||||||..||||..|.||.|||||.||..|.|||||||||||.
BPUM_2035___r 773 TTTATCATGGCGGAATGGATGCGGGAGACCGTATGCTTATTCAGCAGCAA 822
BSNT_03426___ 823 TTTATTCATAACCAGCTTGATGTGATATGTTGTACGAATGCGTTTGGAAT 872
||||||..|.|.|||||||||.|.||.||.|||||||.|||.|||||.||
BPUM_2035___r 823 TTTATTAGTGATCAGCTTGATCTCATTTGCTGTACGAGTGCTTTTGGCAT 872
BSNT_03426___ 873 GGGTGTCGATAAACCCGATATCAGATATGTGATTCATTTTCACCTCCCGC 922
|||..|.||||||.|..||||..|||.|||.||||||.|...||..||||
BPUM_2035___r 873 GGGAATTGATAAAGCAAATATTCGATTTGTCATTCATATGAGCCCACCGC 922
BSNT_03426___ 923 AGACGGCAGAAGCTTTTATGCAGGAAATCGGCAGAGCGGGCCGTGATGGA 972
|..||...|||||.||||||||.||.||.||.||||||||..|.||||||
BPUM_2035___r 923 AATCGATTGAAGCATTTATGCAAGAGATTGGAAGAGCGGGAAGGGATGGA 972
BSNT_03426___ 973 AAGCCGAGTGTCAGCA----TTTTGCTGCGGGCGCCAGGGGATTTTGAAT 1018
||....|||||.|||| |||...|.|.| .||.||||...|||.
BPUM_2035___r 973 AAAAACAGTGTGAGCATTCTTTTATATACAG----AAGAGGATGCAGAAA 1018
BSNT_03426___ 1019 TGCAGGAACAGATTATC----CAGATGGAGAGTGTCACAGCTGAAGAAAT 1064
|.|||.||||..|.||| |||||||| |.|.|| |.|..||||||
BPUM_2035___r 1019 TTCAGCAACACTTGATCCAAGCAGATGGA---TTTGAC-GATCCAGAAAT 1064
BSNT_03426___ 1065 CGCCGACGTAATCCGTGT-CCTAG---AAAAGACGGAGGAGCGG------ 1104
|.|| .|.| ||||| ||..|||..|...||.|
BPUM_2035___r 1065 --------TGAT--TTCTACCTAGCACAACTGACACAAATGCAGATAAAT 1104
BSNT_03426___ 1105 GATGAGAGAAGGCTGCGTG-ACGTATTA------------CTTCAGTATG 1141
|||||.|.||...|.|||| ||| |||| ||||||
BPUM_2035___r 1105 GATGAAAAAAAATTACGTGAACG-ATTAATGGAAACAGGCCTTCAG---- 1149
BSNT_03426___ 1142 GCGTCGGAGAGACACAGGCCCGTATGATG----ATTCATCTCTTTATGCA 1187
|||||||..||..|.|||.|| ||| ||..|.|.|||||
BPUM_2035___r 1150 --------GAGACACGTGCAAGAATGCTGACGCATT-ATTACATGATGCA 1190
BSNT_03426___ 1188 GG----------------GGAAAACATCAGTTGAA-CTGATGAAGAAAGA 1220
.| ||.||.|.|.| .||| ||.| ||||| |
BPUM_2035___r 1191 TGAGTCCGAGCAGCGCCCGGCAATCCTTA--AGAATCTAA--AAGAA--A 1234
BSNT_03426___ 1221 AATTTCATATCGCATGGAGCTG----------AAGCTG-GAAAAAATGCA 1259
||||.|| ||| |.| |||||| ||||
BPUM_2035___r 1235 AATTACA--------GGA-CAGACAAACAGAAAAGCTGAGAAA------- 1268
BSNT_03426___ 1260 CCGTGTATCATTTT--TGCTTCAGCG--TGACGG-------CTGTTTAAG 1298
.||||..||.||| .| |||| |.|.|| |||.||.||
BPUM_2035___r 1269 -GGTGTGGCAATTTAAAG----AGCGGATCATGGATCATAACTGCTTTAG 1313
BSNT_03426___ 1299 GCAGGCACTGTTAACCTACTT---CGA------TGAATCATAC-GAGC-- 1336
.||..|.||||||.|.||||| ||| || ||||.|| ||||
BPUM_2035___r 1314 ACAATCTCTGTTATCATACTTTCACGAACAGATTG-ATCAAACAGAGCGC 1362
BSNT_03426___ 1337 -------CTGATGACGGAAACCTCCCGTGCTGTTCACATTGCGGTTTTGA 1379
||||||| .|||||.||...||||| ||
BPUM_2035___r 1363 GCGTCCTCTGATGA------------TTGCTGCTCTTCTTGCG-----GA 1395
BSNT_03426___ 1380 TTTATCCT---TG--TATGAACTAAAAGGGGCACGGAGTAA-AATGGCGC 1423
.|.|.||| || ||||||..||||| || |||
BPUM_2035___r 1396 CTGAACCTGTCTGATTATGAAAAAAAAG-----------AACAAT----- 1429
BSNT_03426___ 1424 CATTAGACAGCTGGAGTTCGGAATTG---CACCGGATATTCAGCTTGCAG 1470
||||.| |||||.| .|||.|| |||.||| ||
BPUM_2035___r 1430 CATTGG--AGCTGAA----TGAAATGAAACACTGGA------------AG 1461
BSNT_03426___ 1471 ACTGTAGGTGAGCTG-------------AACTGA---------------- 1491
||||| |||| |.||||
BPUM_2035___r 1462 ACTGT------GCTGGATCGTATGTTTCATCTGACAAAAGAGGCGCAGCA 1505
BSNT_03426___ 1491 ---- 1491
BPUM_2035___r 1506 TTGA 1509
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.