Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03425 and BPUM_2034
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:56
# Commandline: needle
# -asequence dna-align/BSNT_03425___ypbD.1.24716.seq
# -bsequence dna-align/BPUM_2034___ypbD.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03425___ypbD-BPUM_2034___ypbD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03425___ypbD-BPUM_2034___ypbD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03425___ypbD
# 2: BPUM_2034___ypbD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 691
# Identity: 406/691 (58.8%)
# Similarity: 406/691 (58.8%)
# Gaps: 137/691 (19.8%)
# Score: 1095.0
#
#
#=======================================
BSNT_03425___ 1 ---------------------ATGACTG--------ACCG--TGATATGC 19
||.|.|| |||| .||.|.|.
BPUM_2034___y 1 TTGATAGAACAACATCGCCGAATCATTGAAAAATTAACCGATCGACAAGT 50
BSNT_03425___ 20 TGAAG--CAGTTATATTTGACGCAGCTACTCATCATCTTTGCCGCTGCTG 67
.|.|| |||.|.|||||.||||||.|.||.|| |||..|
BPUM_2034___y 51 CGTAGAACAGCTGTATTTCACGCAGTTGCTTAT----------GCTTAT- 89
BSNT_03425___ 68 CAGCAGGACTGTTCTTTTTT--GAGG-------ATGT------ACGGGAC 102
|..||||||||| .||| |||| |..||||
BPUM_2034___y 90 --------CGTTTCTTTTTTACTAGGCATATTTATGTTCAATCAATGGAC 131
BSNT_03425___ 103 GTATT----AAAGCTCTGGGACATTCGCGATATGCGAATCATC------- 141
..||| |...||.|||.|.||||..||||||||.|| ||
BPUM_2034___y 132 AGATTTTACATCCCTTTGGCAGATTCATGATATGCGCAT--TCTGACTCA 179
BSNT_03425___ 142 TGGTAT----GGTG-TTTCTATAGCT-GTTATTGTTATTTT--AGCCGAT 183
|||.|| |||| ||| ||| ||.| |||||.| |..||||
BPUM_2034___y 180 TGGAATTGGCGGTGCTTT-----GCTCGTCA---TTATTGTGGATGCGAT 221
BSNT_03425___ 184 ATGGCAGTAATGAAATGGTTTCCGTCTCATTTATATGATGACGGCGGAAT 233
.||.|||||...||||||..|||||.|.||||||||.|||||..|
BPUM_2034___y 222 -----TGTCATGAAGGTGTTTCCCGCTCATATGTATGATGATGGCGGTTT 266
BSNT_03425___ 234 CAATAAAAAAATATTCAGTAA--GAGGTCAATCCCTCATATTATATTTTT 281
.|||.||||.||.||||..|| ||.| .|||||.||||||.|.|..||
BPUM_2034___y 267 AAATGAAAAGATGTTCAAAAACCGAAG--CATCCCGCATATTGTTTGGTT 314
BSNT_03425___ 282 AACGCTTCTGATTGCTTTCGCGGAAGAAATGTTATTCAGAGGAGTGCTGC 331
|||.|||||.|||||.||..|.||.|||||..||||..|.|||.|..|.|
BPUM_2034___y 315 AACACTTCTCATTGCCTTTTCAGAGGAAATACTATTTCGCGGAATTGTTC 364
BSNT_03425___ 332 AGACTCATATCGGTTTATGGGC-------GGCCAGCCTTATATTTGCCGC 374
| |.|.|..|| ||||| .||||||.|..|.|||| |||
BPUM_2034___y 365 A-----ACAACAATT--TGGGCTAGAGATTGCCAGCATCGTGTTTG-CGC 406
BSNT_03425___ 375 -TCTGCACTTTCGGTATTTGTCAAAATGGCTGTTATTTATTATGGTGACA 423
|||.||||||||.|||||.||||||...||.||.|||||..|.|||...
BPUM_2034___y 407 TTCTTCACTTTCGCTATTTATCAAAAATACTCTTGTTTATCCTCGTGGTT 456
BSNT_03425___ 424 GCAATCAGCTTTTTGCTCGGTCTGATGTATGAATGGACCGGCAACTTATT 473
.|.||.||..||||..|.||.||..|.||.||.|||||.||.||..||||
BPUM_2034___y 457 TCCATTAGTATTTTTTTAGGACTTTTATACGAGTGGACGGGAAATCTATT 506
BSNT_03425___ 474 TGTTCCGATGACGGCGCATTTTATCATTGATGCCGTGTTTGCCTGTCAGA 523
||||||..|.|.|.|.||||||.|||||||....||.|||||.|||||.|
BPUM_2034___y 507 TGTTCCTGTTATGACACATTTTGTCATTGACTTAGTCTTTGCTTGTCAAA 556
BSNT_03425___ 524 TTCGTTTTGAACATGTGAGGAGGGATAAACAT-GACGAACATGTCGAGAG 572
|||||||..||.||..|.||||||||.||||| ||.||| |||||||||.
BPUM_2034___y 557 TTCGTTTGAAATATAAGGGGAGGGATGAACATGGAAGAA-ATGTCGAGAA 605
BSNT_03425___ 573 TAGAGAGAAGAAAAG----------CCCAGAATCTTTATGA 603
|..|||||| |.||| ||.|.||.| ||||
BPUM_2034___y 606 TGCAGAGAA-AGAAGGAGCAACTCACCAACAACC---ATGA 642
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