Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03423 and BPUM_2032
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:56
# Commandline: needle
# -asequence dna-align/BSNT_03423___ypbF.1.24716.seq
# -bsequence dna-align/BPUM_2032___ypbF.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03423___ypbF-BPUM_2032___ypbF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03423___ypbF-BPUM_2032___ypbF.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03423___ypbF
# 2: BPUM_2032___ypbF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 498
# Identity: 253/498 (50.8%)
# Similarity: 253/498 (50.8%)
# Gaps: 159/498 (31.9%)
# Score: 634.5
#
#
#=======================================
BSNT_03423___ 1 ATGGAATCCTT---ATGGAATCAGC-------TGGATCAGTTTACAGACG 40
||| .||| |.|.||||||| |||||||
BPUM_2032___y 1 ATG----ACTTTGCACGCAATCAGCCGCTATATGGATCA----------- 35
BSNT_03423___ 41 CGCCGACCAAACAG---ATGCTCCAAGCGCTTG-TAAAACGAAAACAAAA 86
|||||| |||| |||.|..||.|| ||| |.|||.||||.|..||
BPUM_2032___y 36 -GCCGAC---ACAGAAAATGATGGAAACG-TTGATCAAAAGAAAGCTTAA 80
BSNT_03423___ 87 ATTCGAAAATTATGCAGCACAATGCCGCAGATGGCGATGGGCTTCACTTA 136
||..||....|.|||...|||.|||...||.||||.||||.|..|.|||.
BPUM_2032___y 81 ATATGAGGGCTTTGCCAAACAGTGCAAAAGGTGGCAATGGACAGCCCTTT 130
BSNT_03423___ 137 TCTGCCTAGGC--TTATTATGTGTTA-----TGATCATGAGCA---AAAG 176
|.|..|| ||| ||.||.|||.||| ||||.|.| ||| |||
BPUM_2032___y 131 TGTCACT-GGCAATTCTTTTGTTTTATTTTGTGATAACG-GCAAATAAA- 177
BSNT_03423___ 177 CCCGGAGCCTCAGCTTATACTTCA---AGA---------------AATAC 208
||||.||| .||||| ||| |.|.|
BPUM_2032___y 178 ---GGAGGCTC-------TCTTCAGCCAGAAGCAATGATTGCAACACTGC 217
BSNT_03423___ 209 TCAGCCAT-ACCTTTTATTTATTTTGGATGCTGGCAACC----------G 247
||.|.||| |..|.|| |.||||||||||..||| | |
BPUM_2032___y 218 TCGGTCATGAGGTCTT-TCTATTTTGGATCATGG----CTGAGGTGTTTG 262
BSNT_03423___ 248 CTTTTGCCTACTGCACTTCATATTATTTCAAGAAAAAGGAAGAAAAATCC 297
||||| || || ||||.|||||||..||||||||.||||||||..|.
BPUM_2032___y 263 CTTTT---TA-TG--CTTCTTATTATTATAAGAAAAAAGAAGAAAAGGCT 306
BSNT_03423___ 298 GAGACCGATTTCCATAAACTGAGATGTGAAATTAT-TCAGAAAAGCACTG 346
|||...||.|..|||...||.||||||||.||||| .||.||||||||.|
BPUM_2032___y 307 GAGGATGAATATCATCGCCTCAGATGTGAGATTATAACAAAAAAGCACAG 356
BSNT_03423___ 347 ATCTCTGGCCGCAGCCCGATAAATGGAAGGCGAGAGAGTCTGTTTTTCAT 396
|..|.||||||||..|.|||.|.|||||.|.|.|.||
BPUM_2032___y 357 ACTTATGGCCGCAATCAGATCAGTGGAAAGAGCGTGA------------- 393
BSNT_03423___ 397 ATGATGAAGCACAAATATGACATTAATCTATATTTTGAAAGTAAATAA 444
BPUM_2032___y 393 ------------------------------------------------ 393
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