Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03421 and BPUM_2031

See Amino acid alignment / Visit BSNT_03421 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:56
# Commandline: needle
#    -asequence dna-align/BSNT_03421___ypbG.1.24716.seq
#    -bsequence dna-align/BPUM_2031___ypbG.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03421___ypbG-BPUM_2031___ypbG.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03421___ypbG-BPUM_2031___ypbG.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03421___ypbG
# 2: BPUM_2031___ypbG
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 907
# Identity:     498/907 (54.9%)
# Similarity:   498/907 (54.9%)
# Gaps:         245/907 (27.0%)
# Score: 1227.0
# 
#
#=======================================

BSNT_03421___      1 ATGAA----GCTATCAGTGAAA------------ATTGCCGGTG-TACTA     33
                     |||||    ||.|||.|    |            |||||.|.|| ||| |
BPUM_2031___y      1 ATGAAATATGCCATCGG----ATTTACCGCCGCCATTGCGGCTGTTAC-A     45

BSNT_03421___     34 ACTGTTGCG---GCAGCGGCAA------TG---ACGGCAAAA-ATGTATG     70
                     ||.|.||.|   |.|.||||||      ||   ||||||||| |   |..
BPUM_2031___y     46 ACAGGTGTGTGTGTAACGGCAAAAATGGTGAAAACGGCAAAACA---AAA     92

BSNT_03421___     71 CAACAGCAAAAGGCAAT------CATTTGAAGACACATACGTTTCCTTTA    114
                     |||||.|||||.|||.|      ||.|.|||| |||      |||   .|
BPUM_2031___y     93 CAACATCAAAAAGCATTACTTTACAATAGAAG-CAC------TTC---AA    132

BSNT_03421___    115 TCAAAGAT-GAAGGGCAAGCCGCCTCTGACAATCTTTTTTATTTCAGACA    163
                     ||  |||| ||    |.|||.|    ||   ||.||.||||||||.||.|
BPUM_2031___y    133 TC--AGATCGA----CCAGCAG----TG---ATTTTCTTTATTTCTGATA    169

BSNT_03421___    164 TTCACAAACGTCTCATCGATCAAGACCTTTT------------------A    195
                     ..|||...||.|||||   |||.|||...||                  |
BPUM_2031___y    170 CACACCGCCGGCTCAT---TCATGACTCATTATTAGCCGAGGTCACACAA    216

BSNT_03421___    196 GAAAAAGCGCGAAGCCATGCCCCCCACTTGGTTATAATCGGCGGTGATTT    245
                     ||||||.|| ||.|.||              ||||.||.|||||.||.||
BPUM_2031___y    217 GAAAAACCG-GATGTCA--------------TTATGATAGGCGGGGACTT    251

BSNT_03421___    246 AGCTGAGGGCGGGGTGCCCAGTGCGAGAATCGAGGAAAA-----------    284
                     |||.||....||.||.|||...||.|||||.||.|||||           
BPUM_2031___y    252 AGCAGAAAAAGGTGTACCCTACGCCAGAATAGAAGAAAATGTAAAACGTT    301

BSNT_03421___    285 CATCAAAAGGCTCGTACATTTCGGGGTCCC---TATCGTGTTTGTGTGGG    331
                     .|||||.|         |||.||    |||   |||    |||||.||||
BPUM_2031___y    302 TATCAAGA---------ATTGCG----CCCGTTTAT----TTTGTTTGGG    334

BSNT_03421___    332 GGAATAATGATTATGAAGT-CAGGCAGCATAAGCTGTATTCCATATTTAA    380
                     |.|||||||||.|.||..| || .|||||.|||            |||||
BPUM_2031___y    335 GAAATAATGATCACGAGCTGCA-CCAGCAAAAG------------TTTAA    371

BSNT_03421___    381 AGCGCACGG----CATCAT--------------CACTCTGAGAAATGA--    410
                     |      ||    |.||||              .||||||..||||||  
BPUM_2031___y    372 A------GGAATTCTTCATGCTTTCGATGTGACGACTCTGCAAAATGAAA    415

BSNT_03421___    411 -GTCAGTCCCGT----TTT-------CATACAATGGGCATACGATTGCGA    448
                      |.|.||   ||    |||       ||..||||   ||.|        |
BPUM_2031___y    416 CGGCTGT---GTGGGATTTCGAAGGCCAGCCAAT---CAAA--------A    451

BSNT_03421___    449 TTGCGGGGGTTGATGATATCAGGATGGAGATGGATCATTATGAGGAAGCC    498
                     |||..||..||||||||||..||.|.||.|.||...|||||   |||||.
BPUM_2031___y    452 TTGGAGGTATTGATGATATTCGGCTTGAAAAGGCGGATTAT---GAAGCG    498

BSNT_03421___    499 ATCAAAGAACTTGA-----TGAAAGCCAGCTG-----AATATTCTGGTTT    538
                     ||   |..||.|||     ||||    ||.||     ||||||||..|.|
BPUM_2031___y    499 AT---ACGACCTGAGTTCGTGAA----AGGTGACGTAAATATTCTCTTAT    541

BSNT_03421___    539 GCCATAATCCGGAGATTCATGAACAAATCAATGAAGATGACGGTA-----    583
                     ..||.||.||.||..|.|||.|...|||.|.|||||||||.||.|     
BPUM_2031___y    542 CACACAACCCAGATGTACATCATTTAATGAGTGAAGATGAGGGGATCAAC    591

BSNT_03421___    584 -TTGATGTGATACTCAGCGGACATACCCATGGAGGCCAGATCAGGTTTGG    632
                      |||.|.||      |||||.|||||.||||||||.||||||.|..||||
BPUM_2031___y    592 CTTGTTTTG------AGCGGTCATACGCATGGAGGTCAGATCCGAATTGG    635

BSNT_03421___    633 AAAATTCGGCCCTTATGAACTGGGGAAAACAGGTATTGTTAAAAACGCGG    682
                     .|||||.||.||.||||||...||.|.|||||||...||.|||..|||..
BPUM_2031___y    636 GAAATTTGGTCCGTATGAAAAAGGAAGAACAGGTCAGGTCAAAGGCGCAT    685

BSNT_03421___    683 CATATCTAATCAGCAACGGCTACGGCACGACAAAAGTGCCTCTTCGTTTA    732
                     ..|.|||.||.||.||.||.||.||.||.||.||..|.||..|.|||.|.
BPUM_2031___y    686 TTTTTCTCATTAGTAATGGTTATGGGACAACGAAGATTCCAATGCGTCTC    735

BSNT_03421___    733 GGTGCTGAGCCTGAAACTCACATTGTGA-CTCTT---TGCGGGCCAGA--    776
                     ||.||||||||.|||||.||   |.||| ||.||   |||..|.||.|  
BPUM_2031___y    736 GGGGCTGAGCCAGAAACCCA---TTTGATCTATTTAATGCCTGTCAAAAA    782

BSNT_03421___    777 ---ATAA    780
                        ||||
BPUM_2031___y    783 GCGATAA    789


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