Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03421 and BPUM_2031
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:56
# Commandline: needle
# -asequence dna-align/BSNT_03421___ypbG.1.24716.seq
# -bsequence dna-align/BPUM_2031___ypbG.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03421___ypbG-BPUM_2031___ypbG.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03421___ypbG-BPUM_2031___ypbG.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03421___ypbG
# 2: BPUM_2031___ypbG
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 907
# Identity: 498/907 (54.9%)
# Similarity: 498/907 (54.9%)
# Gaps: 245/907 (27.0%)
# Score: 1227.0
#
#
#=======================================
BSNT_03421___ 1 ATGAA----GCTATCAGTGAAA------------ATTGCCGGTG-TACTA 33
||||| ||.|||.| | |||||.|.|| ||| |
BPUM_2031___y 1 ATGAAATATGCCATCGG----ATTTACCGCCGCCATTGCGGCTGTTAC-A 45
BSNT_03421___ 34 ACTGTTGCG---GCAGCGGCAA------TG---ACGGCAAAA-ATGTATG 70
||.|.||.| |.|.|||||| || ||||||||| | |..
BPUM_2031___y 46 ACAGGTGTGTGTGTAACGGCAAAAATGGTGAAAACGGCAAAACA---AAA 92
BSNT_03421___ 71 CAACAGCAAAAGGCAAT------CATTTGAAGACACATACGTTTCCTTTA 114
|||||.|||||.|||.| ||.|.|||| ||| ||| .|
BPUM_2031___y 93 CAACATCAAAAAGCATTACTTTACAATAGAAG-CAC------TTC---AA 132
BSNT_03421___ 115 TCAAAGAT-GAAGGGCAAGCCGCCTCTGACAATCTTTTTTATTTCAGACA 163
|| |||| || |.|||.| || ||.||.||||||||.||.|
BPUM_2031___y 133 TC--AGATCGA----CCAGCAG----TG---ATTTTCTTTATTTCTGATA 169
BSNT_03421___ 164 TTCACAAACGTCTCATCGATCAAGACCTTTT------------------A 195
..|||...||.||||| |||.|||...|| |
BPUM_2031___y 170 CACACCGCCGGCTCAT---TCATGACTCATTATTAGCCGAGGTCACACAA 216
BSNT_03421___ 196 GAAAAAGCGCGAAGCCATGCCCCCCACTTGGTTATAATCGGCGGTGATTT 245
||||||.|| ||.|.|| ||||.||.|||||.||.||
BPUM_2031___y 217 GAAAAACCG-GATGTCA--------------TTATGATAGGCGGGGACTT 251
BSNT_03421___ 246 AGCTGAGGGCGGGGTGCCCAGTGCGAGAATCGAGGAAAA----------- 284
|||.||....||.||.|||...||.|||||.||.|||||
BPUM_2031___y 252 AGCAGAAAAAGGTGTACCCTACGCCAGAATAGAAGAAAATGTAAAACGTT 301
BSNT_03421___ 285 CATCAAAAGGCTCGTACATTTCGGGGTCCC---TATCGTGTTTGTGTGGG 331
.|||||.| |||.|| ||| ||| |||||.||||
BPUM_2031___y 302 TATCAAGA---------ATTGCG----CCCGTTTAT----TTTGTTTGGG 334
BSNT_03421___ 332 GGAATAATGATTATGAAGT-CAGGCAGCATAAGCTGTATTCCATATTTAA 380
|.|||||||||.|.||..| || .|||||.||| |||||
BPUM_2031___y 335 GAAATAATGATCACGAGCTGCA-CCAGCAAAAG------------TTTAA 371
BSNT_03421___ 381 AGCGCACGG----CATCAT--------------CACTCTGAGAAATGA-- 410
| || |.|||| .||||||..||||||
BPUM_2031___y 372 A------GGAATTCTTCATGCTTTCGATGTGACGACTCTGCAAAATGAAA 415
BSNT_03421___ 411 -GTCAGTCCCGT----TTT-------CATACAATGGGCATACGATTGCGA 448
|.|.|| || ||| ||..|||| ||.| |
BPUM_2031___y 416 CGGCTGT---GTGGGATTTCGAAGGCCAGCCAAT---CAAA--------A 451
BSNT_03421___ 449 TTGCGGGGGTTGATGATATCAGGATGGAGATGGATCATTATGAGGAAGCC 498
|||..||..||||||||||..||.|.||.|.||...||||| |||||.
BPUM_2031___y 452 TTGGAGGTATTGATGATATTCGGCTTGAAAAGGCGGATTAT---GAAGCG 498
BSNT_03421___ 499 ATCAAAGAACTTGA-----TGAAAGCCAGCTG-----AATATTCTGGTTT 538
|| |..||.||| |||| ||.|| ||||||||..|.|
BPUM_2031___y 499 AT---ACGACCTGAGTTCGTGAA----AGGTGACGTAAATATTCTCTTAT 541
BSNT_03421___ 539 GCCATAATCCGGAGATTCATGAACAAATCAATGAAGATGACGGTA----- 583
..||.||.||.||..|.|||.|...|||.|.|||||||||.||.|
BPUM_2031___y 542 CACACAACCCAGATGTACATCATTTAATGAGTGAAGATGAGGGGATCAAC 591
BSNT_03421___ 584 -TTGATGTGATACTCAGCGGACATACCCATGGAGGCCAGATCAGGTTTGG 632
|||.|.|| |||||.|||||.||||||||.||||||.|..||||
BPUM_2031___y 592 CTTGTTTTG------AGCGGTCATACGCATGGAGGTCAGATCCGAATTGG 635
BSNT_03421___ 633 AAAATTCGGCCCTTATGAACTGGGGAAAACAGGTATTGTTAAAAACGCGG 682
.|||||.||.||.||||||...||.|.|||||||...||.|||..|||..
BPUM_2031___y 636 GAAATTTGGTCCGTATGAAAAAGGAAGAACAGGTCAGGTCAAAGGCGCAT 685
BSNT_03421___ 683 CATATCTAATCAGCAACGGCTACGGCACGACAAAAGTGCCTCTTCGTTTA 732
..|.|||.||.||.||.||.||.||.||.||.||..|.||..|.|||.|.
BPUM_2031___y 686 TTTTTCTCATTAGTAATGGTTATGGGACAACGAAGATTCCAATGCGTCTC 735
BSNT_03421___ 733 GGTGCTGAGCCTGAAACTCACATTGTGA-CTCTT---TGCGGGCCAGA-- 776
||.||||||||.|||||.|| |.||| ||.|| |||..|.||.|
BPUM_2031___y 736 GGGGCTGAGCCAGAAACCCA---TTTGATCTATTTAATGCCTGTCAAAAA 782
BSNT_03421___ 777 ---ATAA 780
||||
BPUM_2031___y 783 GCGATAA 789
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