Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03420 and BPUM_2030
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:56
# Commandline: needle
# -asequence dna-align/BSNT_03420___ypbH.1.24716.seq
# -bsequence dna-align/BPUM_2030___ypbH.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03420___ypbH-BPUM_2030___ypbH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03420___ypbH-BPUM_2030___ypbH.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03420___ypbH
# 2: BPUM_2030___ypbH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 609
# Identity: 435/609 (71.4%)
# Similarity: 435/609 (71.4%)
# Gaps: 51/609 ( 8.4%)
# Score: 1535.5
#
#
#=======================================
BSNT_03420___ 1 ATGCGGCTTGAGCGTCTGAATTATAATAAGATCAAAATCTTTTTAACCCT 50
|||||.||.||||||||||||||||||||.||||||||.|||.|.||.||
BPUM_2030___y 1 ATGCGACTGGAGCGTCTGAATTATAATAAAATCAAAATTTTTCTCACACT 50
BSNT_03420___ 51 CGATGATTTGACAGACCGGGGATTGACAAAAGAAGACCTCTGGAAGGACT 100
.|||||..|||||||||||||..|.||.|||||||||||.|||||.||.|
BPUM_2030___y 51 AGATGACCTGACAGACCGGGGTCTTACGAAAGAAGACCTTTGGAAAGATT 100
BSNT_03420___ 101 CATTTAAAGTCCACCAGTTATTTAAAGATATGATGAATGAAGCAAATACA 150
|.||.||||||||.|||.|.||||||||.||||||||.|||||.||| ||
BPUM_2030___y 101 CGTTCAAAGTCCATCAGCTGTTTAAAGACATGATGAACGAAGCGAAT-CA 149
BSNT_03420___ 151 -GAGCTCGGCTTTGAAGCGAATGGACCGATTGCAGTGGAAGTGTATTCTC 199
||||||||.||||||||||.||||||||||||.||.|||||.|.|||.|
BPUM_2030___y 150 GGAGCTCGGTTTTGAAGCGAGTGGACCGATTGCTGTTGAAGTATTTTCAC 199
BSNT_03420___ 200 TCCAAGCACAAGGGATGGTCGTGATTGTAACAAAGA---ACCAAGACGCC 246
|.||.||.||.|||||||||||.|||||.||||||| |.||||| .
BPUM_2030___y 200 TTCAGGCGCAGGGGATGGTCGTCATTGTCACAAAGAGTCAGCAAGA---T 246
BSNT_03420___ 247 GATTCAGAAGACGATGAGTATGATGATGATTACATCGAAATGCAAGTCAA 296
|||.|.||.||.|||||||.||||||.||||||||.||.|||||||||||
BPUM_2030___y 247 GATGCTGATGATGATGAGTTTGATGAAGATTACATTGAGATGCAAGTCAA 296
BSNT_03420___ 297 GCTTGATGAAAGCGCGGACATCA-----TATATCAATT--CCATTCCTTT 339
.||.||.||.| |.||||| |.|||||||| || ||.|||
BPUM_2030___y 297 ACTCGACGAGA-----GTCATCATGTGCTCTATCAATTTGCC--TCATTT 339
BSNT_03420___ 340 GAAGATATCATTCAGCTTTCAGAAAGCTTACAGCGAATCGGTATCAC--- 386
||||||.|.|||||.||.||..|.||.|||.|.||.||.|| ||
BPUM_2030___y 340 GAAGATGTGATTCAACTGTCCCATAGTTTAAATCGTATTGG----ACTTT 385
BSNT_03420___ 387 -AGGGGGAACTGTCTACCACTATGACGGGCAGTACTTTTTAAGCC----- 430
||||||.||.||.|||||.|||||.||.||.||.|||.|.||||
BPUM_2030___y 386 TAGGGGGGACAGTTTACCATTATGAAGGACAATATTTTCTCAGCCTTGAT 435
BSNT_03420___ 431 ----TTGAAGATCTAGGGTCACATACGGCTGAAGGGGTTGTGGCGGTTCT 476
|||||||.||| ||| |||||....||..|..|..||.|
BPUM_2030___y 436 GATTTTGAAGAACTA---TCA------GCTGATACCGTCATTTCCATTTT 476
BSNT_03420___ 477 GGCTGAATACGGCAATCCGACAACTTTAACGATTTATCGCCTGCAAGAGT 526
.||.||.|.|||...|||.||.||.|||||||||.||||..|..||||.|
BPUM_2030___y 477 AGCGGAGTTCGGTTCTCCTACGACATTAACGATTCATCGGTTAAAAGAAT 526
BSNT_03420___ 527 ATGGTAAGCTCATTATGGACGGTAATGCCGTAGAAACGATACAAACTCAT 576
|.||.||..|.||.|||.|.|.|.||||.||..|||||||.||||...||
BPUM_2030___y 527 ACGGAAAAGTGATCATGCAAGATGATGCAGTGAAAACGATTCAAATGTAT 576
BSNT_03420___ 577 TTTTCATAA 585
||||.|
BPUM_2030___y 577 TTTTAA--- 582
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