Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03416 and BPUM_2028

See Amino acid alignment / Visit BSNT_03416 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:56
# Commandline: needle
#    -asequence dna-align/BSNT_03416___ypdA.1.24716.seq
#    -bsequence dna-align/BPUM_2028___ypdA.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03416___ypdA-BPUM_2028___ypdA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03416___ypdA-BPUM_2028___ypdA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03416___ypdA
# 2: BPUM_2028___ypdA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1023
# Identity:     728/1023 (71.2%)
# Similarity:   728/1023 (71.2%)
# Gaps:          99/1023 ( 9.7%)
# Score: 2559.5
# 
#
#=======================================

BSNT_03416___      1 ATGATTCAAGAAAAAGCAATTATTATAGGCGGAGGGCCTTGCGGACTATC     50
                     ||||..|||||||||||.||.||.|||||.||.||.||.|||||||||||
BPUM_2028___y      1 ATGAAACAAGAAAAAGCGATCATAATAGGAGGCGGCCCATGCGGACTATC     50

BSNT_03416___     51 CGCTGCCATTCACCTAAAAG-AAATTGGCATTGATGCCCTCGTCATCGAA     99
                     .||||||| ||.|.|..||| ||||.|||||||||||.||.|||||.|||
BPUM_2028___y     51 AGCTGCCA-TCGCATTCAAGCAAATCGGCATTGATGCACTTGTCATTGAA     99

BSNT_03416___    100 AAAGGCAATGTCGTTAACAGTATTTACAATTATCCGACGCATCAAACCTT    149
                     ||.||.||||||||.||.||||||||..||||.||.||.|||||||||||
BPUM_2028___y    100 AAGGGGAATGTCGTCAATAGTATTTATCATTACCCAACACATCAAACCTT    149

BSNT_03416___    150 TTTCAGCTCAAGTGAAAAGCTCGAAATCGGAGATGTGGCATTTATTACGG    199
                     |||.||.||||||||||||||.||.||.||.|||||.||.||||||||.|
BPUM_2028___y    150 TTTTAGTTCAAGTGAAAAGCTTGAGATTGGTGATGTCGCTTTTATTACTG    199

BSNT_03416___    200 AAAACAGGAAGCCTGTCAGAATTCAGGCTTTATCGTATTACCGAGAAGTC    249
                     ||||..|.|||||.||..|.||.|||||..|.||.|||||.||||||||.
BPUM_2028___y    200 AAAATCGCAAGCCCGTACGTATCCAGGCACTTTCTTATTATCGAGAAGTA    249

BSNT_03416___    250 GTCAAACGGAAAAACATCCGTGTTAACGCATTTGAAATGGTGCATAAA--    297
                     ||||.|||.||||.|.|.|||||..|.||.|||||||..|||    ||  
BPUM_2028___y    250 GTCAGACGAAAAAGCCTGCGTGTACATGCCTTTGAAAAAGTG----AACG    295

BSNT_03416___    298 --GTGACGAAA----ACGGAAAATAATACATTTGTTA--TTGAG-ACGTC    338
                       |||||||||    ||||        .||||  |||  .|||| ||.||
BPUM_2028___y    296 CTGTGACGAAAAAAGACGG--------TCATT--TTACCGTGAGCACATC    335

BSNT_03416___    339 AAAAGAGACCTACAAGACGCCATATTGTA-------------TCATCGCC    375
                     ||||||             |.||..||||             |.||.||.
BPUM_2028___y    336 AAAAGA-------------CGATTATGTATGTGATTATGTCGTGATTGCG    372

BSNT_03416___    376 ACAGGCTATTATGATCATCCAAACTATATGAATGT-ACCCGGTGAGAATT    424
                     ||.|||||.|||||||||||||||||||||||||| |...||..|||..|
BPUM_2028___y    373 ACGGGCTACTATGATCATCCAAACTATATGAATGTCAAAGGGGAAGACCT    422

BSNT_03416___    425 TGCCGAAAGTATTTCATTATTTTAAAGAAGGCCACCCGTATTTTGATAAA    474
                     | ||..|.||.|.||||||||||||||||||.|||||.||.|||||||||
BPUM_2028___y    423 T-CCACATGTGTATCATTATTTTAAAGAAGGACACCCATACTTTGATAAA    471

BSNT_03416___    475 GATGTTGTTGTCATCGGCGGGAAAAATTCAAGCGTGGATGCTGCCCTTGA    524
                     |||||....||.|||||.||||||||.|||||.||.||||||||.||.||
BPUM_2028___y    472 GATGTAACGGTGATCGGTGGGAAAAACTCAAGTGTCGATGCTGCGCTAGA    521

BSNT_03416___    525 ACTCGTGAAATCTGGGGCG-----CGTGTCACAGTTTTATATAGGGGCAA    569
                     |||.|||||||     |||     .|.|||||.||..|.|||.|.||||.
BPUM_2028___y    522 ACTTGTGAAAT-----GCGGAAGTAGAGTCACTGTACTGTATCGAGGCAC    566

BSNT_03416___    570 TGAGTATTCTCCAAGCATTAAGCCGTGGATTCTGCCGGAATTTGAAGCCC    619
                     |||.|||||..|.|||||.||.||.||||||.||||.||.||||||||.|
BPUM_2028___y    567 TGAATATTCATCTAGCATCAAACCTTGGATTTTGCCAGAGTTTGAAGCAC    616

BSNT_03416___    620 TCGTCAGAAACGGTACAATCCGTATGGAATTTGGCGCGTGTGTCGAAAAA    669
                     |.||..|.||.||.||.||.||.|||||.|||||.|||...||..|..||
BPUM_2028___y    617 TTGTGCGGAATGGAACGATACGAATGGAGTTTGGAGCGCAGGTGCAGGAA    666

BSNT_03416___    670 ATCACTGAGGATGAAGTTGTGT------ATCGCTCCGGAGAGAAAGAACT    713
                     |||||.||.||.|||||..|.|      |||         ||.||||.| 
BPUM_2028___y    667 ATCACAGAAGAAGAAGTGATTTTTACAAATC---------AGCAAGAGC-    706

BSNT_03416___    714 CATTACCA-------TTAAAAATGATTTTGTATTTGCCATGACAGGCTAT    756
                        .|.||       |.||||.|||||.|||.||||||||||||||||||
BPUM_2028___y    707 ---AAACAGAGCGAGTGAAAAGTGATTATGTTTTTGCCATGACAGGCTAT    753

BSNT_03416___    757 CATCCCGATCA-TCAATTTCTT-GAAAAAATTGGTGTTGA-AATTGATAA    803
                     |||||.||||| ||  |||||| ||||||||.||.| ||| |||||||.|
BPUM_2028___y    754 CATCCAGATCATTC--TTTCTTAGAAAAAATGGGAG-TGACAATTGATCA    800

BSNT_03416___    804 AGAAACAGGGCGTCCA-TATTTCAACGAAGAAACGATGGAAACGAACGTT    852
                     ||||.||||.|||||| .|||| .|.|||.|.||||||||.||.||.||.
BPUM_2028___y    801 AGAATCAGGCCGTCCAGCATTT-GATGAACAGACGATGGAGACAAATGTA    849

BSNT_03416___    853 GAAGGTGTCTTTATTGCCGGGGTTATTGCTGCGGGAAACAATGCAAATGA    902
                     ||||||.|.||.|||||.||.||.|||||.||.|||||.|||||.|||||
BPUM_2028___y    850 GAAGGTATTTTCATTGCAGGAGTCATTGCAGCTGGAAATAATGCCAATGA    899

BSNT_03416___    903 AATATTTATTGAAAACGGCAGGTTTCACGGGGGGCATATCGCAGCGGAAA    952
                     |||.||.||||||||.||.||.|||||.||.||||.|||.||||..||||
BPUM_2028___y    900 AATTTTCATTGAAAATGGGAGATTTCATGGTGGGCTTATTGCAGAAGAAA    949

BSNT_03416___    953 TCGCCAAAAGAGAAAACCATTAA    975
                     ||..|||.|||...|||...|||
BPUM_2028___y    950 TCAACAACAGAATGAACGGATAA    972


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