Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03416 and BPUM_2028
See
Amino acid alignment /
Visit
BSNT_03416 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:56
# Commandline: needle
# -asequence dna-align/BSNT_03416___ypdA.1.24716.seq
# -bsequence dna-align/BPUM_2028___ypdA.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03416___ypdA-BPUM_2028___ypdA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03416___ypdA-BPUM_2028___ypdA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03416___ypdA
# 2: BPUM_2028___ypdA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1023
# Identity: 728/1023 (71.2%)
# Similarity: 728/1023 (71.2%)
# Gaps: 99/1023 ( 9.7%)
# Score: 2559.5
#
#
#=======================================
BSNT_03416___ 1 ATGATTCAAGAAAAAGCAATTATTATAGGCGGAGGGCCTTGCGGACTATC 50
||||..|||||||||||.||.||.|||||.||.||.||.|||||||||||
BPUM_2028___y 1 ATGAAACAAGAAAAAGCGATCATAATAGGAGGCGGCCCATGCGGACTATC 50
BSNT_03416___ 51 CGCTGCCATTCACCTAAAAG-AAATTGGCATTGATGCCCTCGTCATCGAA 99
.||||||| ||.|.|..||| ||||.|||||||||||.||.|||||.|||
BPUM_2028___y 51 AGCTGCCA-TCGCATTCAAGCAAATCGGCATTGATGCACTTGTCATTGAA 99
BSNT_03416___ 100 AAAGGCAATGTCGTTAACAGTATTTACAATTATCCGACGCATCAAACCTT 149
||.||.||||||||.||.||||||||..||||.||.||.|||||||||||
BPUM_2028___y 100 AAGGGGAATGTCGTCAATAGTATTTATCATTACCCAACACATCAAACCTT 149
BSNT_03416___ 150 TTTCAGCTCAAGTGAAAAGCTCGAAATCGGAGATGTGGCATTTATTACGG 199
|||.||.||||||||||||||.||.||.||.|||||.||.||||||||.|
BPUM_2028___y 150 TTTTAGTTCAAGTGAAAAGCTTGAGATTGGTGATGTCGCTTTTATTACTG 199
BSNT_03416___ 200 AAAACAGGAAGCCTGTCAGAATTCAGGCTTTATCGTATTACCGAGAAGTC 249
||||..|.|||||.||..|.||.|||||..|.||.|||||.||||||||.
BPUM_2028___y 200 AAAATCGCAAGCCCGTACGTATCCAGGCACTTTCTTATTATCGAGAAGTA 249
BSNT_03416___ 250 GTCAAACGGAAAAACATCCGTGTTAACGCATTTGAAATGGTGCATAAA-- 297
||||.|||.||||.|.|.|||||..|.||.|||||||..||| ||
BPUM_2028___y 250 GTCAGACGAAAAAGCCTGCGTGTACATGCCTTTGAAAAAGTG----AACG 295
BSNT_03416___ 298 --GTGACGAAA----ACGGAAAATAATACATTTGTTA--TTGAG-ACGTC 338
||||||||| |||| .|||| ||| .|||| ||.||
BPUM_2028___y 296 CTGTGACGAAAAAAGACGG--------TCATT--TTACCGTGAGCACATC 335
BSNT_03416___ 339 AAAAGAGACCTACAAGACGCCATATTGTA-------------TCATCGCC 375
|||||| |.||..|||| |.||.||.
BPUM_2028___y 336 AAAAGA-------------CGATTATGTATGTGATTATGTCGTGATTGCG 372
BSNT_03416___ 376 ACAGGCTATTATGATCATCCAAACTATATGAATGT-ACCCGGTGAGAATT 424
||.|||||.|||||||||||||||||||||||||| |...||..|||..|
BPUM_2028___y 373 ACGGGCTACTATGATCATCCAAACTATATGAATGTCAAAGGGGAAGACCT 422
BSNT_03416___ 425 TGCCGAAAGTATTTCATTATTTTAAAGAAGGCCACCCGTATTTTGATAAA 474
| ||..|.||.|.||||||||||||||||||.|||||.||.|||||||||
BPUM_2028___y 423 T-CCACATGTGTATCATTATTTTAAAGAAGGACACCCATACTTTGATAAA 471
BSNT_03416___ 475 GATGTTGTTGTCATCGGCGGGAAAAATTCAAGCGTGGATGCTGCCCTTGA 524
|||||....||.|||||.||||||||.|||||.||.||||||||.||.||
BPUM_2028___y 472 GATGTAACGGTGATCGGTGGGAAAAACTCAAGTGTCGATGCTGCGCTAGA 521
BSNT_03416___ 525 ACTCGTGAAATCTGGGGCG-----CGTGTCACAGTTTTATATAGGGGCAA 569
|||.||||||| ||| .|.|||||.||..|.|||.|.||||.
BPUM_2028___y 522 ACTTGTGAAAT-----GCGGAAGTAGAGTCACTGTACTGTATCGAGGCAC 566
BSNT_03416___ 570 TGAGTATTCTCCAAGCATTAAGCCGTGGATTCTGCCGGAATTTGAAGCCC 619
|||.|||||..|.|||||.||.||.||||||.||||.||.||||||||.|
BPUM_2028___y 567 TGAATATTCATCTAGCATCAAACCTTGGATTTTGCCAGAGTTTGAAGCAC 616
BSNT_03416___ 620 TCGTCAGAAACGGTACAATCCGTATGGAATTTGGCGCGTGTGTCGAAAAA 669
|.||..|.||.||.||.||.||.|||||.|||||.|||...||..|..||
BPUM_2028___y 617 TTGTGCGGAATGGAACGATACGAATGGAGTTTGGAGCGCAGGTGCAGGAA 666
BSNT_03416___ 670 ATCACTGAGGATGAAGTTGTGT------ATCGCTCCGGAGAGAAAGAACT 713
|||||.||.||.|||||..|.| ||| ||.||||.|
BPUM_2028___y 667 ATCACAGAAGAAGAAGTGATTTTTACAAATC---------AGCAAGAGC- 706
BSNT_03416___ 714 CATTACCA-------TTAAAAATGATTTTGTATTTGCCATGACAGGCTAT 756
.|.|| |.||||.|||||.|||.||||||||||||||||||
BPUM_2028___y 707 ---AAACAGAGCGAGTGAAAAGTGATTATGTTTTTGCCATGACAGGCTAT 753
BSNT_03416___ 757 CATCCCGATCA-TCAATTTCTT-GAAAAAATTGGTGTTGA-AATTGATAA 803
|||||.||||| || |||||| ||||||||.||.| ||| |||||||.|
BPUM_2028___y 754 CATCCAGATCATTC--TTTCTTAGAAAAAATGGGAG-TGACAATTGATCA 800
BSNT_03416___ 804 AGAAACAGGGCGTCCA-TATTTCAACGAAGAAACGATGGAAACGAACGTT 852
||||.||||.|||||| .|||| .|.|||.|.||||||||.||.||.||.
BPUM_2028___y 801 AGAATCAGGCCGTCCAGCATTT-GATGAACAGACGATGGAGACAAATGTA 849
BSNT_03416___ 853 GAAGGTGTCTTTATTGCCGGGGTTATTGCTGCGGGAAACAATGCAAATGA 902
||||||.|.||.|||||.||.||.|||||.||.|||||.|||||.|||||
BPUM_2028___y 850 GAAGGTATTTTCATTGCAGGAGTCATTGCAGCTGGAAATAATGCCAATGA 899
BSNT_03416___ 903 AATATTTATTGAAAACGGCAGGTTTCACGGGGGGCATATCGCAGCGGAAA 952
|||.||.||||||||.||.||.|||||.||.||||.|||.||||..||||
BPUM_2028___y 900 AATTTTCATTGAAAATGGGAGATTTCATGGTGGGCTTATTGCAGAAGAAA 949
BSNT_03416___ 953 TCGCCAAAAGAGAAAACCATTAA 975
||..|||.|||...|||...|||
BPUM_2028___y 950 TCAACAACAGAATGAACGGATAA 972
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.