Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03414 and BPUM_2027
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:56
# Commandline: needle
# -asequence dna-align/BSNT_03414___ypdC.1.24716.seq
# -bsequence dna-align/BPUM_2027___ypdC.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03414___ypdC-BPUM_2027___ypdC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03414___ypdC-BPUM_2027___ypdC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03414___ypdC
# 2: BPUM_2027___ypdC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 677
# Identity: 485/677 (71.6%)
# Similarity: 485/677 (71.6%)
# Gaps: 40/677 ( 5.9%)
# Score: 1673.5
#
#
#=======================================
BSNT_03414___ 1 ATGTTTGCAATCATCTCTGCAGGAATTGCCCCCGGCATCGCGTTATTAAG 50
|||.|.|||||||||||.|||||..|.||.|||||||||||..|.|||||
BPUM_2027___y 1 ATGATCGCAATCATCTCAGCAGGTTTAGCTCCCGGCATCGCACTTTTAAG 50
BSNT_03414___ 51 TTATTTTTATTTAAAAGATCAGTATGATAATGAACCTGTACATATGGTGC 100
||||||||||||.|||||||||||.||.|||||.||.|||||.||||| |
BPUM_2027___y 51 TTATTTTTATTTGAAAGATCAGTACGACAATGAGCCGGTACACATGGT-C 99
BSNT_03414___ 101 TTC-GGTCGTTTTTTCTCGGGGTTGTTCTTGTATTTCCCATCATGTTTAT 149
.|| |.||.|||.|.||.||.|||.|.|||||.|||||.|.|||||||||
BPUM_2027___y 100 ATCAGATCTTTTATGCTAGGCGTTATACTTGTGTTTCCAACCATGTTTAT 149
BSNT_03414___ 150 CCAGTATGTACTTGAAAAAGAGAATGT----AGGAGGCGGAAGTTTTTTC 195
.||.|||||.||..||.|.|||.||.| |.||..| .|.|.||.
BPUM_2027___y 150 TCAATATGTCCTACAAGAGGAGCATATCACCACGAACC----CTATCTTG 195
BSNT_03414___ 196 GTTTCTTTTTTATCCTCGGGGTTTTTGGAGGAATCATTAAAATGGTTTAT 245
.||||.|||.|..|.|||||.|||||.||||||||.||||||||||||||
BPUM_2027___y 196 ATTTCATTTGTGACGTCGGGCTTTTTAGAGGAATCTTTAAAATGGTTTAT 245
BSNT_03414___ 246 ACTGATGATCAGTGTTTACCCGCACGCCCACTTTGATGAGCATTATGACG 295
..|.|||.||||.||.||..|.||.|||||.|||||.||.||.|||||.|
BPUM_2027___y 246 TTTAATGGTCAGCGTCTATGCACATGCCCAATTTGACGAACACTATGATG 295
BSNT_03414___ 296 GGATTGTGTACGGTACAAGTGTATCACTCGGTTTTGCAACCCTCGAAAAT 345
|||||||.||.||.||||||||.|||||.|||||.||.||.||.||||||
BPUM_2027___y 296 GGATTGTATATGGAACAAGTGTCTCACTTGGTTTCGCCACACTTGAAAAT 345
BSNT_03414___ 346 ATTCTTTATTTAATTGGCCACGGCGTAGAGCATGCGTTTGTCAGGGCGCT 395
||||||||||||.|.||.|||||.||.||..||||||||..|.|.||..|
BPUM_2027___y 346 ATTCTTTATTTAGTCGGTCACGGGGTTGAATATGCGTTTACCCGTGCTTT 395
BSNT_03414___ 396 GCTGCCTGTTTCATGCCATGCCTTGATT-GGCGTTATAATGGGATTTTAC 444
..|.||.||.|||.|.|||| |||.||| ||.|||.|.|||||.|||||.
BPUM_2027___y 396 ATTACCCGTCTCAAGTCATG-CTTTATTCGGTGTTGTGATGGGGTTTTAT 444
BSNT_03414___ 445 CTTGGAAAAGCCCGTTTTTCCGCTGATAA--------GGCGCGTGTAAAG 486
.|.||.||||||||.|| |.||||.|| .|||| ||.
BPUM_2027___y 445 ATCGGCAAAGCCCGCTT---CTCTGAAAAAAAAGAGCAGCGC-----AAA 486
BSNT_03414___ 487 TGGCTTACTCTTTCTTTAGTTGTCCCATCC----CTTTTGCATGGATCAT 532
|||||.|.|||||||||| .|.|.||| |||||.||.||....|
BPUM_2027___y 487 TGGCTGATTCTTTCTTTA----ACGCTTCCTGTGCTTTTTCACGGCCTTT 532
BSNT_03414___ 533 ATGATTTTATCCTAACAGCGCTTAGCAATT--GGATTTATTATATGCTTC 580
|||||||.||..|...||.|.|.|..|||| ||||.||| .|||||.|
BPUM_2027___y 533 ATGATTTCATATTGTTAGGGATGAAAAATTGGGGATATAT--CATGCTGC 580
BSNT_03414___ 581 CATTTATGGTATTTTTATGGTGGTTTGGTTTGCGTAAAGCGAAAAAAGCC 630
||||.|||.|.|||||||||||||||||..||||.|||||.|||||.||.
BPUM_2027___y 581 CATTCATGATTTTTTTATGGTGGTTTGGCCTGCGAAAAGCAAAAAAGGCT 630
BSNT_03414___ 631 CGTTCCGTTAATATGATGCAAGTATAG 657
|||||.||.||.|||.|||||.|.||.
BPUM_2027___y 631 CGTTCTGTGAAAATGGTGCAAATTTAA 657
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