Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03392 and BPUM_2012
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:54
# Commandline: needle
# -asequence dna-align/BSNT_03392___yphF.1.24716.seq
# -bsequence dna-align/BPUM_2012___yphF.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03392___yphF-BPUM_2012___yphF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03392___yphF-BPUM_2012___yphF.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03392___yphF
# 2: BPUM_2012___yphF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 800
# Identity: 485/800 (60.6%)
# Similarity: 485/800 (60.6%)
# Gaps: 139/800 (17.4%)
# Score: 1309.5
#
#
#=======================================
BSNT_03392___ 1 ATGGGTAAACTGAAGTGCGCAA---TCATTTTTGCG------GCAGTCGT 41
|||...||| |||| |||.|.|..|| |||.|..|
BPUM_2012___y 1 ATGATCAAA---------GCAAAAGTCAGTGTCACGTTGTTAGCACTTAT 41
BSNT_03392___ 42 GTTTTTATCCGGATGTTTATATCC---AAAT----GAACGGAAAAGCAGT 84
|||..||.|.||.|||.|.||||| |||| .|||.||||| |.||
BPUM_2012___y 42 GTTACTAACAGGTTGTCTGTATCCAGAAAATCGCAAAACTGAAAA-CCGT 90
BSNT_03392___ 85 GTGCATGCCATTCCTTATCAAGACCAGCT--AAAGCAGGTTCAATCTGCT 132
||| ||.||..||||.||||| ||||| |||||..|.||.
BPUM_2012___y 91 GTG---------CCGTACGAAGAGCAGCTACAAAGC--GTTCAGACAGCG 129
BSNT_03392___ 133 GTTGATGAATTTCAAAAGG---CAAATGGAGGGCTGCTTCCCATTCAAAC 179
.||||.|||||||||||.| ||||| ||.||..|.||.|||.||||
BPUM_2012___y 130 ATTGAGGAATTTCAAAAAGCAACAAAT---GGTCTTTTGCCGATTGAAAC 176
BSNT_03392___ 180 AAAAGATATGTCGACA--CCGCTATATCAAAAATATCCG--ATAGACTTT 225
.|||| |.|..|||| |||.|.|||||.||.|| || ||.||||||
BPUM_2012___y 177 GAAAG--AAGGAGACACGCCGGTTTATCAGAAGTA--CGTCATCGACTTT 222
BSNT_03392___ 226 AACCGGTTAGCGCCAAGATACATA---GCTGAACCTCCAAGT--ACGGCA 270
||.||.||..|.||||||||..|| |.||.||| || ||..|.
BPUM_2012___y 223 AAGCGCTTGTCACCAAGATATTTACACGATGTACC-----GTCGACTTCC 267
BSNT_03392___ 271 TTTGAAAGCGGGGGAGACTATCAATACGTGCTTGTTGACGTAGAGAACGA 320
||||||.||||||||||.|||...||.||.||....|||||.||.||..|
BPUM_2012___y 268 TTTGAAGGCGGGGGAGAATATATTTATGTCCTCACAGACGTCGAAAAAAA 317
BSNT_03392___ 321 TCCGACTGTTAAATTAATTGATCTAAAGATGGCAGAAAAAATTCGCGAT- 369
.||.|||||.|||.|..|||||.|.||.|||.|..||| |.||
BPUM_2012___y 318 ACCAACTGTGAAACTGCTTGATGTCAAAATGACGCAAA-------CCATC 360
BSNT_03392___ 370 -GTGAAATTGC------GCATCCAAATGTATCGTCAGGAGCATCAATATC 412
||| ||||.| |.|||.||.|.||||...|.||.|||..|||||
BPUM_2012___y 361 AGTG-AATTACGGCTTAGAATCAAATTATATCAAGATGAACATACATATC 409
BSNT_03392___ 413 CGCCTTACAAGG--ATGTGCTATCTCGCGATTTATTTACACTCGATGAGA 460
||||.||| || |.||..||||...|.||||||.|||..|..||||.|
BPUM_2012___y 410 CGCCATAC--GGCAAAGTCGTATCAAACAATTTATATACGTTAAATGAAA 457
BSNT_03392___ 461 AGAAGCTTGGGGATGGAAGCT---------CTCTTACAGTGACAAGCCCA 501
|.||||| |.||| |.|.|||.||.|..|||||.
BPUM_2012___y 458 AAAAGCT---------AGGCTTAAAATCGCCGCCTACGGTCATGAGCCCT 498
BSNT_03392___ 502 ATCTCAGGGAATTCCTTGCCGCTTA-TGATTGACGGAGACGGAGAAATAT 550
.|..|||||||||||.| ||..||| |||||.....|.|.||.|||||.|
BPUM_2012___y 499 GTGACAGGGAATTCCCT-CCCATTACTGATTTCATCAAATGGCGAAATCT 547
BSNT_03392___ 551 ATGCTGATTACCGGACTGAGCTGACTTCTTGCCTCA------AAA--AAA 592
|||..||.|||||.|.||| |.||| |||| ||| |.|
BPUM_2012___y 548 ATGTGGACTACCGCAGTGA-------TTTTG-CTCATATTTTAAAGGATA 589
BSNT_03392___ 593 GCAAAAAAACGTTTAAACCCGGGACTGAA---ATCCAGGATATGATTTGG 639
..|||.|||.|||.||.||.|| |||| ||.||.|||.|...||||
BPUM_2012___y 590 CGAAACAAAAGTTGAACCCAGG---TGAAAACATTCAAGATGTCTATTGG 636
BSNT_03392___ 640 GAGGAAACCCCCTTTGTCCCCGCGTTTTCTGTAAAATATACGGTAAATGA 689
.||||||||||.|||||.||||||||||||||...||||||..|.||..|
BPUM_2012___y 637 CAGGAAACCCCGTTTGTACCCGCGTTTTCTGTTCCATATACCATCAACAA 686
BSNT_03392___ 690 CAAACAGGAACCTGTTTTTTTAGAAAATGATATGAAAAAGGA----ATGA 735
.|||...|||||.|..|||||||| |||||.|| ||.|
BPUM_2012___y 687 AAAAGGCGAACCCGACTTTTTAGA----------AAAAAAGACCTCATAA 726
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