Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03384 and BPUM_2008
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:54
# Commandline: needle
# -asequence dna-align/BSNT_03384___mtrB.1.24716.seq
# -bsequence dna-align/BPUM_2008___mtrB.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03384___mtrB-BPUM_2008___mtrB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03384___mtrB-BPUM_2008___mtrB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03384___mtrB
# 2: BPUM_2008___mtrB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 232
# Identity: 155/232 (66.8%)
# Similarity: 155/232 (66.8%)
# Gaps: 35/232 (15.1%)
# Score: 576.0
#
#
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BSNT_03384___ 1 ATGAACCAAAAGCATTCAAGTGATTTTGTCGTCATTAAAGCCGTTGAGGA 50
||.|||||||||..|||..|
BPUM_2008___m 1 ------------------------------GTGATTAAAGCCAATGAAAA 20
BSNT_03384___ 51 CGGAGTGAATGTGATCGGCCTGACAAGAGGAACAGACACAAAGTTTCACC 100
.||.||.||.||.||||||.|.||.|||||..|.|||||||.||||||||
BPUM_2008___m 21 TGGTGTAAACGTCATCGGCTTAACTAGAGGCTCTGACACAAGGTTTCACC 70
BSNT_03384___ 101 ATTCCGAAAAACTCGACAAGGGAGAAGTGATCATCGCTCAGTTTACAGAG 150
||||||||||.|||||.||.||.||||||||.||.||.||.|||||.|||
BPUM_2008___m 71 ATTCCGAAAAGCTCGATAAAGGTGAAGTGATTATTGCACAATTTACTGAG 120
BSNT_03384___ 151 CATACTTCTGCCATTAAAGTCAGAGGAGAGGCACTGATTCAAAC-CGCGT 199
|||||.||.||.||.|||||.|||||.||.||..|.|||||||| .|| |
BPUM_2008___m 121 CATACGTCAGCGATCAAAGTAAGAGGCGATGCTGTCATTCAAACAAGC-T 169
BSNT_03384___ 200 ACGGAGAAATGAAAAGCGA---AAAAAAATAA 228
.|||.|||||..||||||| |||.||||||
BPUM_2008___m 170 TCGGGGAAATTCAAAGCGAAGCAAAGAAATAA 201
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