Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03382 and BPUM_2006
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:54
# Commandline: needle
# -asequence dna-align/BSNT_03382___ubiE.1.24716.seq
# -bsequence dna-align/BPUM_2006___ubiE.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03382___ubiE-BPUM_2006___ubiE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03382___ubiE-BPUM_2006___ubiE.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03382___ubiE
# 2: BPUM_2006___ubiE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 715
# Identity: 554/715 (77.5%)
# Similarity: 554/715 (77.5%)
# Gaps: 23/715 ( 3.2%)
# Score: 2111.5
#
#
#=======================================
BSNT_03382___ 1 ATGCAGGACTCAAAAGAACAGCGCGTACACGGAGTATTTGAAAAAATATA 50
||||||.|.||||||||||||||.||||||||.||||||||||||||.||
BPUM_2006___u 1 ATGCAGCAATCAAAAGAACAGCGAGTACACGGTGTATTTGAAAAAATTTA 50
BSNT_03382___ 51 TAAAAACTATGACCAAATGAACTCTGTCATCAGTTTTCAGCAGCATAAAA 100
|||||||||.||.||||||||||||||||||||.|||.||||||||||||
BPUM_2006___u 51 TAAAAACTACGATCAAATGAACTCTGTCATCAGCTTTAAGCAGCATAAAA 100
BSNT_03382___ 101 AATGGCGCGATAAAACGATGCGCATCATGAATGTAAAAGAAGGCGCAAAA 150
||||||||||||||||.|||....||||||||||..||.||||.||.|||
BPUM_2006___u 101 AATGGCGCGATAAAACAATGAAACTCATGAATGTTCAAAAAGGAGCCAAA 150
BSNT_03382___ 151 GCACTTGATGTCTGCTGCGGAACGGCTGACTGGACGATCGCTCTTGCAAA 200
|||.|.||.||.|||||||||||.||.||.|||||.||.||.|||||..|
BPUM_2006___u 151 GCATTAGACGTATGCTGCGGAACAGCCGATTGGACCATTGCGCTTGCTGA 200
BSNT_03382___ 201 AGCGGCCGG---CAAAAGCGGCGAGATCAAGGGCTTGGATTTCAGTGAAA 247
.||.|..|| |||| ||.||..||||||||.|.|||||.|||.|||
BPUM_2006___u 201 TGCTGTTGGAGACAAA---GGTGAAGTCAAGGGCCTTGATTTTAGTAAAA 247
BSNT_03382___ 248 ATATGCTGAGTGTCGGCGAGCAGAAAGTAA----AAGA-CGGCGGATTCA 292
|||||.|||||||.|| |||||..|| |||| .||.||.|..|
BPUM_2006___u 248 ATATGTTGAGTGTTGG-----AGAAACGAAGGTGAAGAGTGGGGGCTATA 292
BSNT_03382___ 293 GCCAAATTGAACTGCTGCACGGAAATGCGATGGAGCTTCCTTTTGATGAT 342
..|||||||||.||||.|||||||||||||||||||||||||||||.|||
BPUM_2006___u 293 ATCAAATTGAATTGCTCCACGGAAATGCGATGGAGCTTCCTTTTGAGGAT 342
BSNT_03382___ 343 GATACATTTGATTATGTCACCATTGGCTTCGGGCTCCGCAATGTCCCTGA 392
.|.|||||||||||||||||.||.||.||.||.||.||.||.|||||.||
BPUM_2006___u 343 AACACATTTGATTATGTCACGATCGGTTTTGGCCTACGGAACGTCCCAGA 392
BSNT_03382___ 393 TTACTTGACTGTACTGAAAGAGATGAGACGTGTAGTGAAGCCGGGCGGGC 442
||||||.||.||.||.|||||.||||.|.|.||.||||||||.||.||..
BPUM_2006___u 393 TTACTTAACGGTGCTAAAAGAAATGACAAGAGTCGTGAAGCCTGGTGGAA 442
BSNT_03382___ 443 AGGTGGTATGTCTGGAAACGTCCCAGCCGGAAATGATCGGATTCAGAC-A 491
.|||.||.|||||.||.||.||.||.||.||||||||.||.||.|.|| |
BPUM_2006___u 443 TGGTTGTCTGTCTAGAGACATCACAACCTGAAATGATTGGGTTTAAACAA 492
BSNT_03382___ 492 GGCTTACTTTATGTACTTTAAGTATATTATGCCGTTTTTCGGGAAACTGT 541
||| ||||.|.|.||.||.||.||.||.||||||.|.||.||.|||||||
BPUM_2006___u 493 GGC-TACTATGTCTATTTCAAATACATCATGCCGCTCTTTGGTAAACTGT 541
BSNT_03382___ 542 TTGCGAAGAGCTATAAAGAATATTCTTGGCTTCAAGAATCAGCCAGAGAT 591
||||.||.||||||.|.||.|||||.|||||||||||||||||||.||..
BPUM_2006___u 542 TTGCCAAAAGCTATCAGGAGTATTCATGGCTTCAAGAATCAGCCAAAGCG 591
BSNT_03382___ 592 TTCCCTGGAATGAAGGAACTGGCAGGC-CTGTTTGAAGAGGCGGGCCTGA 640
||||||||.|||||.|||||||| ||| ||.||.|||||||||||.|||.
BPUM_2006___u 592 TTCCCTGGCATGAAAGAACTGGC-GGCTCTTTTCGAAGAGGCGGGTCTGT 640
BSNT_03382___ 641 AAAATGTTAAATATCATTCGTTTACTGGCGGAGTCGCTGCCACGCATATC 690
...||||....||||||.|.|||||.|||||.||.||.||.||.||||||
BPUM_2006___u 641 CTGATGTCTCGTATCATCCATTTACAGGCGGTGTAGCAGCAACACATATC 690
BSNT_03382___ 691 GGATGGAA---ATGA 702
|||..||| .|||
BPUM_2006___u 691 GGAAAGAAGCTTTGA 705
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