Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03380 and BPUM_2004

See Amino acid alignment / Visit BSNT_03380 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:54
# Commandline: needle
#    -asequence dna-align/BSNT_03380___ndk.1.24716.seq
#    -bsequence dna-align/BPUM_2004___ndk.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03380___ndk-BPUM_2004___ndk.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03380___ndk-BPUM_2004___ndk.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03380___ndk
# 2: BPUM_2004___ndk
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 458
# Identity:     322/458 (70.3%)
# Similarity:   322/458 (70.3%)
# Gaps:          22/458 ( 4.8%)
# Score: 1076.5
# 
#
#=======================================

BSNT_03380___      1 ATGGAAAAGACTTTTATCATGGTGAAACCAGACGGTGTCCAACGTCAGCT     50
                     |||||.||.||.|||.|.|||||.|||||.||.|||||..||.|.||..|
BPUM_2004___n      1 ATGGACAAAACATTTCTTATGGTCAAACCTGATGGTGTAGAAAGACAATT     50

BSNT_03380___     51 CATTGGGGACATTTTATCTAGATTCGAACGTAA-GGGCTTACAATTAGCT     99
                     .||.||.||.|||.|.||.|||||||||...|| |||||| ||..|.|.|
BPUM_2004___n     51 AATCGGTGAAATTGTGTCAAGATTCGAAAAAAAGGGGCTT-CAGCTTGTT     99

BSNT_03380___    100 GGCGCCAAGTTAATGAGAGTGACTGAACAAATGGCTGAGAAACAC--TAC    147
                     ||.||.||..|||||||..|..|..||.||.|.||  ||||||||  |||
BPUM_2004___n    100 GGTGCAAAACTAATGAGTATTCCAAAAGAAGTAGC--AGAAACACATTAC    147

BSNT_03380___    148 GCCGAACATCAAGGAAAGCCTTTCTTCGGAGAGCTCGTTGAGTTTATTAC    197
                     |..||.|||.|||.|||.||.||.|||||.||..|.|||||.||||||||
BPUM_2004___n    148 GGAGAGCATAAAGAAAAACCATTTTTCGGGGAATTGGTTGACTTTATTAC    197

BSNT_03380___    198 TTCAGGACCAGTATTCGCAATGGTGTGGGAAGGCGAAAATGTCATTGAAG    247
                     .|||||||||||.||.||||||||.|||.||||.|||.|.||..|.||.|
BPUM_2004___n    198 ATCAGGACCAGTGTTTGCAATGGTATGGCAAGGTGAACAGGTAGTCGATG    247

BSNT_03380___    248 TGACGAGACAGCTGATCGGGAAAACAAACCCTAAAGAAGCTTTACCTGGT    297
                     |.||.||||||.|||||||.|||||||||||.||.|||||..|.||.||.
BPUM_2004___n    248 TCACAAGACAGATGATCGGCAAAACAAACCCGAAGGAAGCGCTTCCGGGC    297

BSNT_03380___    298 ACGATTCGTGGGGATTATGGCATGTTTGTCGGAAAAAACATCATCCACGG    347
                     |||||..|.||.||.|||||..||...||.|||||||||||.|||||.||
BPUM_2004___n    298 ACGATAAGAGGAGACTATGGATTGACAGTTGGAAAAAACATTATCCATGG    347

BSNT_03380___    348 CTCTGATTCTCTCGAAAGTGCAGAACGCGAGATTAACATTTTCTTTAAGA    397
                     .||.||.||.|..||||||||.|||.|.||.||.|||.|.|||||.||..
BPUM_2004___n    348 TTCAGACTCACCAGAAAGTGCTGAAAGAGAAATCAACTTATTCTTCAAAC    397

BSNT_03380___    398 ATGAAG-AATTA-------GTATCATATCAGCAGCTTATGGCAGGCTGGA    439
                     |.|||| |||||       |.||||.|.|        ||..||.||||||
BPUM_2004___n    398 AAGAAGAAATTACAAACTGGGATCAAACC--------ATCTCAAGCTGGA    439

BSNT_03380___    440 TCTATTAA    447
                     |.||||||
BPUM_2004___n    440 TTTATTAA    447


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