Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03376 and BPUM_2002
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Amino acid alignment /
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:53
# Commandline: needle
# -asequence dna-align/BSNT_03376___aroF.1.24716.seq
# -bsequence dna-align/BPUM_2002___aroF.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03376___aroF-BPUM_2002___aroF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03376___aroF-BPUM_2002___aroF.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03376___aroF
# 2: BPUM_2002___aroF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1216
# Identity: 905/1216 (74.4%)
# Similarity: 905/1216 (74.4%)
# Gaps: 68/1216 ( 5.6%)
# Score: 3366.5
#
#
#=======================================
BSNT_03376___ 1 ATGAAGGGAGAAGAAGTCATGAGATATTTAACAGCCGGAGAATCACACGG 50
||||||||.||||||||.||.||||||||.||
BPUM_2002___a 1 ------------------ATGAGATACTTAACAGCAGGTGAATCACATGG 32
BSNT_03376___ 51 CCCCCAACTGACAACCATTATTGAGGGTGTACCTGCCGGGCTTTACATAA 100
.||.|||.||||.||.||||||||.||.||.||.||.||.|||||||||.
BPUM_2002___a 33 TCCACAATTGACCACAATTATTGAAGGCGTTCCAGCGGGACTTTACATAG 82
BSNT_03376___ 101 CGGAGGAAGATATCAATTTTGAGCTTGCCAGACGCCAAAAAGGACACGGC 150
.|.||||.||.||.||.|.|||..|.||.|||.|.||||||||.||||||
BPUM_2002___a 83 AGCAGGATGACATTAACTATGAATTGGCTAGAAGACAAAAAGGTCACGGC 132
BSNT_03376___ 151 CGCGGCCGCCGCATGCAGATCGAAAAAGACCAGGCCAAA--ATTATGAGC 198
||||||.|..|.||||||||.|||||||||||.||.||| |||| |||
BPUM_2002___a 133 CGCGGCAGAAGAATGCAGATAGAAAAAGACCAAGCGAAAGTATTA--AGC 180
BSNT_03376___ 199 GGGGTGCGCCATGCACG----TACACTCGGTTCACCAATTGCTCTCGTAG 244
||.||.||| |||| .|||.|.|||||.||.|||||.||.||.|
BPUM_2002___a 181 GGTGTTCGC----CACGGGAAAACATTAGGTTCTCCTATTGCACTTGTCG 226
BSNT_03376___ 245 TTGAAAATAACGATTGGAAGCATTGGACAAAAATCATGGGCGCCGCCCCG 294
|||||||.|||||.||||||||||||||||||.|.|||||.||.|..|||
BPUM_2002___a 227 TTGAAAACAACGACTGGAAGCATTGGACAAAAGTGATGGGGGCAGAGCCG 276
BSNT_03376___ 295 ATTACAGAAGATGAAGAAAAGGAAATGAAGCGCCAGATTTCCAGACCTAG 344
||.||||||||.|||||||..|||||||||||.||.|||||..|.|||||
BPUM_2002___a 277 ATCACAGAAGAAGAAGAAAGTGAAATGAAGCGTCAAATTTCACGCCCTAG 326
BSNT_03376___ 345 ACCTGGGCACGCTGACTTAAACGGTGCAATTAAATATAATCATCGTGATA 394
|||.||.||.||.||.|||||.|||||.|||||||||...||.|||||||
BPUM_2002___a 327 ACCAGGACATGCGGATTTAAATGGTGCGATTAAATATGGACACCGTGATA 376
BSNT_03376___ 395 TGAGAAATGTGCTTGAGCGTTCTTCAGCAAGGGAAACAACTGTCAGAGTG 444
||.||||.||..|.||||||||.|||||..|.||.||||||||..|.||.
BPUM_2002___a 377 TGCGAAACGTATTAGAGCGTTCATCAGCTCGTGAGACAACTGTTCGCGTA 426
BSNT_03376___ 445 GCGGCAGGGGCTGTAGCTAAAAAGATTCTTTCTGAGC-----TTGGCATT 489
||.|||||.||.||.||||||.|.| |||.||| |.||.||.
BPUM_2002___a 427 GCAGCAGGCGCAGTCGCTAAACAAA-----TCTTAGCTCATTTAGGAATC 471
BSNT_03376___ 490 AAGGTGGCGGGCCACG-TGTTGCAAATTGGCGCTGTTAAAGCTGAAAAAA 538
||.||.||.||||||| |.||| |||||||||..||.|||||.|...|.|
BPUM_2002___a 472 AAAGTAGCAGGCCACGTTCTTG-AAATTGGCGGAGTGAAAGCAGCTCATA 520
BSNT_03376___ 539 CAGAATATACGTCAATTGAAGACCTGCAGCGCGTAACGGAAGAGTCTCCT 588
|.|.||||...|||||||||||..||||....||||||||||||||.|||
BPUM_2002___a 521 CGGCATATGAATCAATTGAAGATTTGCAAAAGGTAACGGAAGAGTCACCT 570
BSNT_03376___ 589 GTCAGATGCTACGA---TGAAGAGGCAGGCAAAAAAATGATGGCTGCCAT 635
||..|.|||||||| |||| |||||..||||||||||||.||||||
BPUM_2002___a 571 GTTCGCTGCTACGACAGTGAA---GCAGGTCAAAAAATGATGGATGCCAT 617
BSNT_03376___ 636 TGATGAAGCAAAGGCAAACGGAGATTCCATCGGCGGAATAGTAGAAGTCA 685
|||||||||.|||..|||.||.|||||.||.||.|||||.||.|||||.|
BPUM_2002___a 618 TGATGAAGCGAAGAAAAATGGTGATTCAATTGGTGGAATTGTGGAAGTTA 667
BSNT_03376___ 686 TTGTCGAGGGAATGCCGGTAGGCGTGGGCAGCTATGTCCATTATGACCGC 735
|.||.||.||||||||.||.||.||.||.||||||||.||.|||||||||
BPUM_2002___a 668 TCGTTGAAGGAATGCCTGTTGGAGTCGGGAGCTATGTTCACTATGACCGC 717
BSNT_03376___ 736 AAACTGGATAGCAAGCTTGCTGCCGCTGTACTGTCAATTAATGCATTTAA 785
|||.|.||||||||||||||.|..|||||.|||...||.||.||.|||||
BPUM_2002___a 718 AAATTAGATAGCAAGCTTGCAGGTGCTGTCCTGAGTATCAACGCTTTTAA 767
BSNT_03376___ 786 AGGTGTGGAATTCGGGATCGGATTTGAGGCGGC-----AGGCCGAAATGG 830
|||.||.||||||||.|||||.||||||||||| | ||||||
BPUM_2002___a 768 AGGGGTTGAATTCGGTATCGGCTTTGAGGCGGCTTCTAA-----AAATGG 812
BSNT_03376___ 831 AAGCGAAGTCCATGACGAGATCATTTGGGACGAGGAAAAAGGATACACCC 880
.||.||.||||||||.||.|||||.|||||.||.|||||.||.||.||
BPUM_2002___a 813 CAGTGAGGTCCATGATGAAATCATCTGGGATGAAGAAAAGGGCTATAC-- 860
BSNT_03376___ 881 GTGCTACTAACAGA---CTT-GGCGGACTGGAAGGCGGCATGACGACAGG 926
|..|..||||.| ||| ||.||.||.||||||||.|||.|.||.||
BPUM_2002___a 861 --GAGAAAAACAAATCGCTTAGGTGGTCTTGAAGGCGGAATGTCAACTGG 908
BSNT_03376___ 927 GATGCCAATCGTTGTCCGCGGAGTCATGAAGCCGATTCCGACTTTGTATA 976
.||||||||.||.||..|.||.||||||||.||.||.||.||..|.||.|
BPUM_2002___a 909 TATGCCAATTGTCGTAAGAGGGGTCATGAAACCAATCCCAACGCTTTACA 958
BSNT_03376___ 977 AACCTCTGAAAAGTGTCGATATTGAAACGAAAGAACCGTTTTCCGCCAGC 1026
||||.||..||||.||.||.||||||||.||||||||.||.|||||.||.
BPUM_2002___a 959 AACCGCTTCAAAGCGTTGACATTGAAACAAAAGAACCTTTCTCCGCAAGT 1008
BSNT_03376___ 1027 ATTGAACGTTCAGACAGCTGTGCTGTTCCTGCGGCAAGTGTAGTCGCTGA 1076
|||||||||||.||||||||||||||||||||.||||||||.|||||.||
BPUM_2002___a 1009 ATTGAACGTTCTGACAGCTGTGCTGTTCCTGCCGCAAGTGTTGTCGCAGA 1058
BSNT_03376___ 1077 AGCGGCTGTCGCTTGGGAAATTGCGAACGCAGTCGTTGAACAATTCGGAT 1126
|||.|..||.|||||||||||.||.||.||.||.||.||.||.||.||..
BPUM_2002___a 1059 AGCAGTCGTGGCTTGGGAAATCGCCAATGCTGTAGTGGAGCAGTTTGGCC 1108
BSNT_03376___ 1127 TAGATCAAATTGACCGCATTAGAGAAAATGTGGAGAATATGAGAAAACTG 1176
|.|||||||||||||||||||.|||||||||.||.||.|||.|..|.||
BPUM_2002___a 1109 TTGATCAAATTGACCGCATTAAAGAAAATGTTGAAAAAATGCGCCAGCT- 1157
BSNT_03376___ 1177 TC-GAGGGAATTTTAA 1191
|| |||||||||||||
BPUM_2002___a 1158 TCAGAGGGAATTTTAA 1173
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