Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03375 and BPUM_2001
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:53
# Commandline: needle
# -asequence dna-align/BSNT_03375___aroB.1.24716.seq
# -bsequence dna-align/BPUM_2001___aroB.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03375___aroB-BPUM_2001___aroB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03375___aroB-BPUM_2001___aroB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03375___aroB
# 2: BPUM_2001___aroB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1199
# Identity: 720/1199 (60.1%)
# Similarity: 720/1199 (60.1%)
# Gaps: 217/1199 (18.1%)
# Score: 2006.5
#
#
#=======================================
BSNT_03375___ 1 ATGAAGACACTGCATGTTCAAACTGCTTCCTCGTCATATCCTGTTTTTAT 50
|||||.|||.||.|.|||.|.||..||||..|..|.||||||||.|..||
BPUM_2001___a 1 ATGAAAACATTGGAAGTTAAGACGTCTTCAGCTACTTATCCTGTATACAT 50
BSNT_03375___ 51 CGGACAAGGTATCAGAA---AAAA-----GGCTTGCGAACT--------- 83
|||..|.||.||.| || ||.| |.||||...|||
BPUM_2001___a 51 CGGTGATGGGATTA-AACGCAATATCGTCGACTTGATGACTTCCACGGGG 99
BSNT_03375___ 84 -ATTAACCTCTTTAAAC-AGGCCTTTAACAAGGATTATGCTTGTCACGGA 131
||| || ||.|| |.||..|||| |.|||||.||
BPUM_2001___a 100 CATT--CC----TATACGAAGCTCTTAA------------TCGTCACAGA 131
BSNT_03375___ 132 TGAAGAAGTGGACCGCC-TGTATGGTGATGAAATGCTCCATTTGCTGCAA 180
|..||..||.|| .||| |.||.||||||||||||.|.|..||.||..||
BPUM_2001___a 132 TACAGCGGTTGA-TGCCATTTACGGTGATGAAATGGTTCGATTACTTGAA 180
BSNT_03375___ 181 GATAAATGGCCTGTGAAAAAAGTGACGGTACCGAGTGGAGAGCAGGCAAA 230
.|.||||||.|||||.|.||||||...||.||.||.|||||||||.|.||
BPUM_2001___a 181 CAAAAATGGTCTGTGCATAAAGTGGTTGTGCCAAGCGGAGAGCAGTCGAA 230
BSNT_03375___ 231 ATCCATGGACATGTACACAAAATTGCAGAGT-----------------GA 263
||| ..||||.|||| .|
BPUM_2001___a 231 ATC-----------------TTTTGCTGAGTTTGAGCATATTCATACGAA 263
BSNT_03375___ 264 AGCGATTCGTTTTCATTTGGATCGCTCCTCATGCATCATCGCATTCGGTG 313
|||.||.|..|||||..|.|||||||||||.||.|||||.||..|.||.|
BPUM_2001___a 264 AGCCATACAATTTCAGCTAGATCGCTCCTCGTGTATCATTGCGCTTGGAG 313
BSNT_03375___ 314 GCGGTGTTGTAGGGGATCTTGCCGGTTTTGTGGCTGCCACTTTTATGCGC 363
||||.||..|.||.|||.|.||.||.|||||.|||||.|.||..|||.|.
BPUM_2001___a 314 GCGGCGTAATTGGCGATTTGGCTGGCTTTGTTGCTGCTAGTTACATGAGA 363
BSNT_03375___ 364 GGCATTGATTTCATCCAAATGCCTACGACGCTCTTGGCGCATGACAGCGC 413
||.||||||||.||.|||.|.||.||||||||..||||.||.|||||.||
BPUM_2001___a 364 GGTATTGATTTTATTCAAGTTCCGACGACGCTGCTGGCACACGACAGTGC 413
BSNT_03375___ 414 AGTCGG-AGGAAAAGTAGCCG----TGAACCATCCGCTTGGAAAAAATCT 458
|||.|| .|||||| || |.||||||||.||.||.||||||.|
BPUM_2001___a 414 AGTTGGCGGGAAAA-----CGGGGATTAACCATCCTCTCGGTAAAAATTT 458
BSNT_03375___ 459 AATCGGTGCGTTTTATCAGCCGAAAGCCGTGCTCTATGATAC-AGATTTC 507
|||||||||||||.||||||||||||||||..|.|||||||| || |
BPUM_2001___a 459 AATCGGTGCGTTTCATCAGCCGAAAGCCGTCATTTATGATACGAG----C 504
BSNT_03375___ 508 CTGCGT---------TCTCTGCCTGAAAAAGAGCTTAGGTCCGGAATGGC 548
.|||.| ||||...|||||| |.|||||.||..|.||
BPUM_2001___a 505 ATGCTTGAGACACTATCTCAAACTGAAA------TGAGGTCAGGCTTTGC 548
BSNT_03375___ 549 AGAAGTGATTAAACACGCTTTTATCT---ATGACAGAGCGTTTCTGGAGG 595
.||.||.||.|||||.||..|.|||| .||| ||..|||.|..|.|
BPUM_2001___a 549 TGAGGTCATCAAACATGCCCTCATCTCAAGTGA---AGACTTTTTAAAAG 595
BSNT_03375___ 596 AGCTGCTGAATATCCACTCACTGCGTGATATCACTAATGATC-------- 637
|||||.||..|||.|..||..||..|| ||||.||
BPUM_2001___a 596 AGCTGATGTCTATTCGTTCTTTGGATG--------AATGCTCAAAAAGCG 637
BSNT_03375___ 638 AGCT-GAATGACATGATTTTTAAAGGCATT----TCAATTAAAGCGTCTG 682
|||| |.| .|.|||.|.|.|.|||||||| || ||||||||..
BPUM_2001___a 638 AGCTCGCA-CATATGCTGTATCAAGGCATTGAGGTC----AAAGCGTCGA 682
BSNT_03375___ 683 TCGTTCAGCAGGATGAAAAAGAAGAGGGGATAAGAGCTTACTTAAACTTC 732
|.|||||..|.|||||||.||||.|.||..|..|.||.|..||.||.||.
BPUM_2001___a 683 TTGTTCAAAAAGATGAAAGAGAACAAGGTGTGCGTGCATTTTTGAATTTA 732
BSNT_03375___ 733 GGGCATACGCTCGGTCATGCCGTTGAGGCGGAATATGGATACGGGCAGAT 782
||.|||||.||.||.||||||.||||.||.||.|||||||||||....||
BPUM_2001___a 733 GGTCATACACTTGGGCATGCCATTGAAGCAGAGTATGGATACGGCGTTAT 782
BSNT_03375___ 783 CACTCACGGTGATGCCGTAGCCCTCGGAATGCAGTTTGCTTTATATATAA 832
.||.|||||.|||||..|.||..||||.|||||||||||..|||||.|.|
BPUM_2001___a 783 TACACACGGAGATGCTATTGCAATCGGCATGCAGTTTGCGCTATATGTGA 832
BSNT_03375___ 833 GCGAAAAGA--CTGTAGGCT-----------GTGAAATGGACAGAAAACG 869
||||||||| ||| .|||| || |.|||...||||
BPUM_2001___a 833 GCGAAAAGAAGCTG-GGGCTCAGCCTTCATCGT---ACGGAACTAAAA-- 876
BSNT_03375___ 870 TTTGGTCAGCTGGCTAAAAAGCCTGGGTTATCCAAGT-CAAATCAGAAAA 918
.|| |||.|.||||..||.||.|.||| .|| |||.|||...||
BPUM_2001___a 877 ------GAG-TGGATGAAAAAACTCGGATTTCC-GGTACAAGTCACCCAA 918
BSNT_03375___ 919 GA------GACGGAAACTTCGGTTCTCTTGGACCGTATGATGAATGATAA 962
|| .|||.||||.|..||| |||||.|||||...||||||
BPUM_2001___a 919 GATATTTCCACGAAAACATTTGTT------GACCGGATGATTGGTGATAA 962
BSNT_03375___ 963 GAAAACCCGTGGCGGGAAGA----------TTCAGTTTATTGTGCTCAAT 1002
.|| ||.|||| ||||.|||.||.|..|.||.
BPUM_2001___a 963 AAA----------GGCAAGAGGTGGAACCGTTCAATTTGTTTTATTAAAA 1002
BSNT_03375___ 1003 GAATTAGGGAAAGTTGCTGATCATACA---TTTTCCAGAA-ATGAACTTG 1048
.|..|.|| ||.||||| ||.|.|| |||..||.|| ||||.||
BPUM_2001___a 1003 CAGGTTGG---AGATGCTG-TCTTGCAGTCTTTCACAAAAGATGATCT-- 1046
BSNT_03375___ 1049 AGAGC-----TGGCTGAACAAATGGCGATTGGAGGAGACAT---CATGA 1089
|| |||||..|..|||||..|..|||||||..|| .||||
BPUM_2001___a 1047 ---GCATCAATGGCTCGATGAATGGAAACGGGAGGAGGGATGTCTATGA 1092
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