Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03375 and BPUM_2001

See Amino acid alignment / Visit BSNT_03375 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:53
# Commandline: needle
#    -asequence dna-align/BSNT_03375___aroB.1.24716.seq
#    -bsequence dna-align/BPUM_2001___aroB.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03375___aroB-BPUM_2001___aroB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03375___aroB-BPUM_2001___aroB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03375___aroB
# 2: BPUM_2001___aroB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1199
# Identity:     720/1199 (60.1%)
# Similarity:   720/1199 (60.1%)
# Gaps:         217/1199 (18.1%)
# Score: 2006.5
# 
#
#=======================================

BSNT_03375___      1 ATGAAGACACTGCATGTTCAAACTGCTTCCTCGTCATATCCTGTTTTTAT     50
                     |||||.|||.||.|.|||.|.||..||||..|..|.||||||||.|..||
BPUM_2001___a      1 ATGAAAACATTGGAAGTTAAGACGTCTTCAGCTACTTATCCTGTATACAT     50

BSNT_03375___     51 CGGACAAGGTATCAGAA---AAAA-----GGCTTGCGAACT---------     83
                     |||..|.||.||.| ||   ||.|     |.||||...|||         
BPUM_2001___a     51 CGGTGATGGGATTA-AACGCAATATCGTCGACTTGATGACTTCCACGGGG     99

BSNT_03375___     84 -ATTAACCTCTTTAAAC-AGGCCTTTAACAAGGATTATGCTTGTCACGGA    131
                      |||  ||    ||.|| |.||..||||            |.|||||.||
BPUM_2001___a    100 CATT--CC----TATACGAAGCTCTTAA------------TCGTCACAGA    131

BSNT_03375___    132 TGAAGAAGTGGACCGCC-TGTATGGTGATGAAATGCTCCATTTGCTGCAA    180
                     |..||..||.|| .||| |.||.||||||||||||.|.|..||.||..||
BPUM_2001___a    132 TACAGCGGTTGA-TGCCATTTACGGTGATGAAATGGTTCGATTACTTGAA    180

BSNT_03375___    181 GATAAATGGCCTGTGAAAAAAGTGACGGTACCGAGTGGAGAGCAGGCAAA    230
                     .|.||||||.|||||.|.||||||...||.||.||.|||||||||.|.||
BPUM_2001___a    181 CAAAAATGGTCTGTGCATAAAGTGGTTGTGCCAAGCGGAGAGCAGTCGAA    230

BSNT_03375___    231 ATCCATGGACATGTACACAAAATTGCAGAGT-----------------GA    263
                     |||                 ..||||.||||                 .|
BPUM_2001___a    231 ATC-----------------TTTTGCTGAGTTTGAGCATATTCATACGAA    263

BSNT_03375___    264 AGCGATTCGTTTTCATTTGGATCGCTCCTCATGCATCATCGCATTCGGTG    313
                     |||.||.|..|||||..|.|||||||||||.||.|||||.||..|.||.|
BPUM_2001___a    264 AGCCATACAATTTCAGCTAGATCGCTCCTCGTGTATCATTGCGCTTGGAG    313

BSNT_03375___    314 GCGGTGTTGTAGGGGATCTTGCCGGTTTTGTGGCTGCCACTTTTATGCGC    363
                     ||||.||..|.||.|||.|.||.||.|||||.|||||.|.||..|||.|.
BPUM_2001___a    314 GCGGCGTAATTGGCGATTTGGCTGGCTTTGTTGCTGCTAGTTACATGAGA    363

BSNT_03375___    364 GGCATTGATTTCATCCAAATGCCTACGACGCTCTTGGCGCATGACAGCGC    413
                     ||.||||||||.||.|||.|.||.||||||||..||||.||.|||||.||
BPUM_2001___a    364 GGTATTGATTTTATTCAAGTTCCGACGACGCTGCTGGCACACGACAGTGC    413

BSNT_03375___    414 AGTCGG-AGGAAAAGTAGCCG----TGAACCATCCGCTTGGAAAAAATCT    458
                     |||.|| .||||||     ||    |.||||||||.||.||.||||||.|
BPUM_2001___a    414 AGTTGGCGGGAAAA-----CGGGGATTAACCATCCTCTCGGTAAAAATTT    458

BSNT_03375___    459 AATCGGTGCGTTTTATCAGCCGAAAGCCGTGCTCTATGATAC-AGATTTC    507
                     |||||||||||||.||||||||||||||||..|.|||||||| ||    |
BPUM_2001___a    459 AATCGGTGCGTTTCATCAGCCGAAAGCCGTCATTTATGATACGAG----C    504

BSNT_03375___    508 CTGCGT---------TCTCTGCCTGAAAAAGAGCTTAGGTCCGGAATGGC    548
                     .|||.|         ||||...||||||      |.|||||.||..|.||
BPUM_2001___a    505 ATGCTTGAGACACTATCTCAAACTGAAA------TGAGGTCAGGCTTTGC    548

BSNT_03375___    549 AGAAGTGATTAAACACGCTTTTATCT---ATGACAGAGCGTTTCTGGAGG    595
                     .||.||.||.|||||.||..|.||||   .|||   ||..|||.|..|.|
BPUM_2001___a    549 TGAGGTCATCAAACATGCCCTCATCTCAAGTGA---AGACTTTTTAAAAG    595

BSNT_03375___    596 AGCTGCTGAATATCCACTCACTGCGTGATATCACTAATGATC--------    637
                     |||||.||..|||.|..||..||..||        ||||.||        
BPUM_2001___a    596 AGCTGATGTCTATTCGTTCTTTGGATG--------AATGCTCAAAAAGCG    637

BSNT_03375___    638 AGCT-GAATGACATGATTTTTAAAGGCATT----TCAATTAAAGCGTCTG    682
                     |||| |.| .|.|||.|.|.|.||||||||    ||    ||||||||..
BPUM_2001___a    638 AGCTCGCA-CATATGCTGTATCAAGGCATTGAGGTC----AAAGCGTCGA    682

BSNT_03375___    683 TCGTTCAGCAGGATGAAAAAGAAGAGGGGATAAGAGCTTACTTAAACTTC    732
                     |.|||||..|.|||||||.||||.|.||..|..|.||.|..||.||.||.
BPUM_2001___a    683 TTGTTCAAAAAGATGAAAGAGAACAAGGTGTGCGTGCATTTTTGAATTTA    732

BSNT_03375___    733 GGGCATACGCTCGGTCATGCCGTTGAGGCGGAATATGGATACGGGCAGAT    782
                     ||.|||||.||.||.||||||.||||.||.||.|||||||||||....||
BPUM_2001___a    733 GGTCATACACTTGGGCATGCCATTGAAGCAGAGTATGGATACGGCGTTAT    782

BSNT_03375___    783 CACTCACGGTGATGCCGTAGCCCTCGGAATGCAGTTTGCTTTATATATAA    832
                     .||.|||||.|||||..|.||..||||.|||||||||||..|||||.|.|
BPUM_2001___a    783 TACACACGGAGATGCTATTGCAATCGGCATGCAGTTTGCGCTATATGTGA    832

BSNT_03375___    833 GCGAAAAGA--CTGTAGGCT-----------GTGAAATGGACAGAAAACG    869
                     |||||||||  ||| .||||           ||   |.|||...||||  
BPUM_2001___a    833 GCGAAAAGAAGCTG-GGGCTCAGCCTTCATCGT---ACGGAACTAAAA--    876

BSNT_03375___    870 TTTGGTCAGCTGGCTAAAAAGCCTGGGTTATCCAAGT-CAAATCAGAAAA    918
                           .|| |||.|.||||..||.||.|.||| .|| |||.|||...||
BPUM_2001___a    877 ------GAG-TGGATGAAAAAACTCGGATTTCC-GGTACAAGTCACCCAA    918

BSNT_03375___    919 GA------GACGGAAACTTCGGTTCTCTTGGACCGTATGATGAATGATAA    962
                     ||      .|||.||||.|..|||      |||||.|||||...||||||
BPUM_2001___a    919 GATATTTCCACGAAAACATTTGTT------GACCGGATGATTGGTGATAA    962

BSNT_03375___    963 GAAAACCCGTGGCGGGAAGA----------TTCAGTTTATTGTGCTCAAT   1002
                     .||          ||.||||          ||||.|||.||.|..|.||.
BPUM_2001___a    963 AAA----------GGCAAGAGGTGGAACCGTTCAATTTGTTTTATTAAAA   1002

BSNT_03375___   1003 GAATTAGGGAAAGTTGCTGATCATACA---TTTTCCAGAA-ATGAACTTG   1048
                     .|..|.||   ||.||||| ||.|.||   |||..||.|| ||||.||  
BPUM_2001___a   1003 CAGGTTGG---AGATGCTG-TCTTGCAGTCTTTCACAAAAGATGATCT--   1046

BSNT_03375___   1049 AGAGC-----TGGCTGAACAAATGGCGATTGGAGGAGACAT---CATGA   1089
                        ||     |||||..|..|||||..|..|||||||..||   .||||
BPUM_2001___a   1047 ---GCATCAATGGCTCGATGAATGGAAACGGGAGGAGGGATGTCTATGA   1092


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