Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03372 and BPUM_1999
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:53
# Commandline: needle
# -asequence dna-align/BSNT_03372___trpE.1.24716.seq
# -bsequence dna-align/BPUM_1999___trpE.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03372___trpE-BPUM_1999___trpE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03372___trpE-BPUM_1999___trpE.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03372___trpE
# 2: BPUM_1999___trpE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1650
# Identity: 1085/1650 (65.8%)
# Similarity: 1085/1650 (65.8%)
# Gaps: 204/1650 (12.4%)
# Score: 3309.0
#
#
#=======================================
BSNT_03372___ 1 ATGAATTTCCAATCAAACATTTCCGCATTTTTAGAGGACAGCTTGTCCCA 50
|||||||.|||.|||||..|..||..|||||||..|||||||..||||||
BPUM_1999___t 1 ATGAATTCCCATTCAAATGTAACCCGATTTTTAAGGGACAGCGAGTCCCA 50
BSNT_03372___ 51 CCACACGATACCGATTGTGGAGACCTTCACAGTCGATACACTGACACCCA 100
|.|.|||||.||||||||.||.|||.|.|||||.|||||.||..||||.|
BPUM_1999___t 51 CAAAACGATCCCGATTGTTGAAACCATTACAGTTGATACGCTCTCACCGA 100
BSNT_03372___ 101 TTCAAATGATAGAGAAGCTTGACAGG---GAGATTACGTATCTTCTTGAA 147
|||||||..|.||.||.|| ||.| ||.|||..||||||..|.|||
BPUM_1999___t 101 TTCAAATTGTCGAAAAACT---CAAGGCAGATATTGTGTATCTATTAGAA 147
BSNT_03372___ 148 AGCAAGGACGATACATCCACTTGGTCCAGATATTCGTTTATCGGCCTGAA 197
||.||.||.||..|.||.|..|||||.||||||||.||.|||||..|..|
BPUM_1999___t 148 AGTAAAGATGAGTCTTCTAGCTGGTCGAGATATTCCTTCATCGGATTACA 197
BSNT_03372___ 198 TCCATTT-----CTCACA--AT-----TAAAGAAGA----GCAGGGCTGT 231
|||.||| ||.||| || .||.|||.| |||
BPUM_1999___t 198 TCCTTTTTTAACCTTACATGATGACCAAAACGAATATATTGCA------- 240
BSNT_03372___ 232 TTTTCG----GCCGCTGATCAGGA---CAGCAAATCTCTTTACACAGGAA 274
|| ||.||||..||||| ||..||| |.||
BPUM_1999___t 241 ----CGTGACGCTGCTGGGCAGGAGGTCATGAAA-------AAAC----- 274
BSNT_03372___ 275 ATGAACTAAAAGAAGTGCTGA----ACTGGATG-AATACCACATACAAAA 319
|.|||||.||||| ||.| |||||||| ||.|.|| |||..|||
BPUM_1999___t 275 AAGAACTGAAAGA----CTTATTAGACTGGATGAAAGAGCA-ATATCAAA 319
BSNT_03372___ 320 TCAAAACACCTCAGCTTGGCATTCCTTTTGTCGGCGGAGCTGTCGGGTAC 369
||||.|||||..|..|||.|||.||.|||...|||||.||.||.|||||.
BPUM_1999___t 320 TCAAGACACCAGATGTTGACATCCCGTTTACAGGCGGGGCAGTTGGGTAT 369
BSNT_03372___ 370 TTAAGCTATGATATGATCCC--GCTGATTGAACCTTCTGT---TCCT--- 411
|||||.||||||.|.||.|| || |||||||||||||| .|||
BPUM_1999___t 370 TTAAGTTATGATCTTATTCCAAGC--ATTGAACCTTCTGTCAGGCCTCAC 417
BSNT_03372___ 412 ----TCGCATACAAAAGAAACAGACATGGAAAAGTGTATGCTGTTTGTTT 457
.||||| ||| .|||| ||.||.||||..||.|||||.|
BPUM_1999___t 418 CGAAGCGCAT-CAA-------CGACA--GACAATTGTACTCTATTTGTCT 457
BSNT_03372___ 458 GCCGGACATTAATTGCGTATGATCATGAAACCAAAAACGTCCACTTTATC 507
|||..||..|.|||||.|.||||||.|||||.||..||||.||.||||||
BPUM_1999___t 458 GCCAAACGATGATTGCTTTTGATCACGAAACGAATCACGTTCATTTTATC 507
BSNT_03372___ 508 CAATATGCA---AGGCTTAA-TGGAGAGGAAACAAAAAACGAAAAAATGG 553
||||| || || |||| .|||.|.||||||.||.||||||||||..
BPUM_1999___t 508 CAATA--CACCCAG--TTAACCGGAAATGAAACAGAAGACGAAAAAATAC 553
BSNT_03372___ 554 ATGTATTCC-------ATCAAAATCATCTGGA------GCTTCAAAATCT 590
|.| .||.| |||||||.||.||.|| |.||||.||.||
BPUM_1999___t 554 AAG-CTTACAAAGAGAATCAAAAGCAGCTTGAACAGATGATTCACAAGCT 602
BSNT_03372___ 591 -CATTGAAAAAATGATGGACCAAAAAAACATAAAAGAGCTGTTTCTCTCT 639
|||..|||.|.|||| ||.|||||.|||.||.|.||.
BPUM_1999___t 603 CCATACAAAGATTGAT-------------ATGAAAGAACTGATTTTATCA 639
BSNT_03372___ 640 GCTGATTCAT--ACAAGACGCCCAGCTTTGAGAC-GGTATCTTCTAATTA 686
|...|| || ||.|..|.||....||||| || .||..|.||.|..||
BPUM_1999___t 640 GGGAAT--ATGAACGAATCACCGTCGTTTGA-ACATGTGACATCAACCTA 686
BSNT_03372___ 687 TGAAAAATCGGCTTTTATGGCT----GATGTAGAAAAAATCAAAAGCTAT 732
|||||||..|...||| || ||.|||||||||||||||...||.
BPUM_1999___t 687 TGAAAAAGAGCAATTT----CTAAAGGACGTAGAAAAAATCAAAGAATAC 732
BSNT_03372___ 733 ATAAAAACAGGCGATATCTTCCAGGGTGTTTTATCACAAAAATTTGAGGT 782
||...|.|.||.|||||.||.||.||.||..|.|||||....||.||..|
BPUM_1999___t 733 ATTCGAGCGGGTGATATTTTTCAAGGCGTACTCTCACAGCGTTTCGATAT 782
BSNT_03372___ 783 GCCGATAAAAG---CAGATG----CTTTTGAGTTATACCGAGTGCTTAGG 825
.|| || ||| || |.|||||.|||||.||.||||||.|.
BPUM_1999___t 783 CCC------AGTGTCAG-TGAGTTCATTTGAATTATATCGTGTGCTTCGC 825
BSNT_03372___ 826 ATCGTCAATCCTTCGCCGTATATGTATTATATGAAACTGCTAGACAGAGA 875
||.||.|||||.||.||.||.|||||||.|||||||.|...||||.|.||
BPUM_1999___t 826 ATTGTGAATCCATCTCCATACATGTATTTTATGAAATTAAAAGACCGTGA 875
BSNT_03372___ 876 AATAGTCGGCAGCTCTCCGGAACGGTTAATACACGTTCAAGACGGGCACT 925
..|||||||.|||||.||.|||||.|||||.||.|...||.|..||.|||
BPUM_1999___t 876 TTTAGTCGGAAGCTCACCAGAACGATTAATTCATGCCAAAAATAGGAACT 925
BSNT_03372___ 926 TAGAAATCCATCCGATTGCCGGTACGAGAAAACGCGGTGCAGACAAAGCT 975
|||||||.|||||.|||||.||.||.||||||.|.||.||| ||||| .
BPUM_1999___t 926 TAGAAATTCATCCTATTGCAGGCACTAGAAAAAGAGGAGCA-ACAAA--A 972
BSNT_03372___ 976 GAAGATGA----GAGATTG-AAGGTTGAGCTGAT-GAAGGATGAAAAAGA 1019
|||||.|| |.|.|.| ||| .|||||..| ||| |||||.|||||
BPUM_1999___t 973 GAAGAGGACGCCGCGCTGGCAAG--AGAGCTACTAGAA-GATGAGAAAGA 1019
BSNT_03372___ 1020 AAAGGCGGAGCATTACATGCTCGTTGATCTTGCCCGAAACGATATCGGCA 1069
|||.||.||.|||||||||.|.||.|||||.|||.||||.|||.|||||.
BPUM_1999___t 1020 AAAAGCAGAACATTACATGTTAGTAGATCTAGCCAGAAATGATGTCGGCC 1069
BSNT_03372___ 1070 GAGTAGCAGAGTATGGTTCTGTTTCTGTGCCGGAGTTCACAAAAATTGTT 1119
|.||||||||.||.||....||.||.||.|||...||.||||||.|.||.
BPUM_1999___t 1070 GCGTAGCAGAATACGGCAGCGTATCCGTACCGACCTTTACAAAAGTAGTG 1119
BSNT_03372___ 1120 TCCTTTTCACATGTCATGCACATTATCTCGGTGGTTACAGGCCGATTGAA 1169
..|||||||||||||||||||||.|||||..|.||.||||| |||
BPUM_1999___t 1120 AACTTTTCACATGTCATGCACATCATCTCCATTGTGACAGG------GAA 1163
BSNT_03372___ 1170 ---AAAAGGGGTT---CATCCTGTCGATGCACTGATGTCTGCTTTCCCGG 1213
|||...||.| ||.||.||.||||||||.|||||.||.||.||.|
BPUM_1999___t 1164 GCTAAAGCAGGATACACACCCAGTTGATGCACTCATGTCCGCATTTCCAG 1213
BSNT_03372___ 1214 CGGGGACTTTAACAGGCGCACCCAAAATCCGTGCCATGCAGCTTTTGCAA 1263
|.||.||.||||||||.|||||.|||||..|.||.|||||..|.||..|.
BPUM_1999___t 1214 CAGGCACATTAACAGGGGCACCAAAAATAAGAGCGATGCAATTATTAAAT 1263
BSNT_03372___ 1264 GAGCTCGAGCCAACACCGAGAGAGACATACGGAGGATGTATTGCCTACAT 1313
||..|.||||||...||.||.||.||.||.||.||.|||||||||||.||
BPUM_1999___t 1264 GAAATGGAGCCAGAGCCAAGGGAAACGTATGGCGGCTGTATTGCCTATAT 1313
BSNT_03372___ 1314 TGGGTTTGACGGGAATATCGACTCTTGTATTACGATTCGCACGATGAGTG 1363
|||.||||||||.||||||||||||||||||||.||||||||.|||||.|
BPUM_1999___t 1314 TGGATTTGACGGTAATATCGACTCTTGTATTACCATTCGCACCATGAGCG 1363
BSNT_03372___ 1364 TAAAGAACGGCGTT------GCATCGATACAGGCAGGTGCTGGCATTGTT 1407
|.||.|| | ||.||.|||||.|||||.|||||||||||.
BPUM_1999___t 1364 TCAAAAA------TCAGACCGCCTCCATACAAGCAGGCGCTGGCATTGTC 1407
BSNT_03372___ 1408 GCTGATTCTGTTCCGGAAGCCGAATACGAAGAAAGCTGTAATAAAGCCGG 1457
||.||||||||.||.|||...||||..|||||.|..|||||.||.||.||
BPUM_1999___t 1408 GCAGATTCTGTACCAGAAAATGAATGGGAAGAGACATGTAACAAGGCAGG 1457
BSNT_03372___ 1458 TGCGCTGCTGAAAACGATTCATATTGCAGAAGACATGTTTCATAGCAAGG 1507
.|||||.||||...|.|||||..||||.|||.|.|| ||||..||.||
BPUM_1999___t 1458 AGCGCTTCTGAGGGCCATTCAGCTTGCTGAACATAT-TTTCTCAGAAA-- 1504
BSNT_03372___ 1508 AGGA-----TAAAGCTGATGAA-CAG---ATTTCTACAATTGTGCGTTGA 1548
|||| |..|| |||||| ||| .|.||..||.|| |||.|
BPUM_1999___t 1505 AGGAGAGTGTGCAG--GATGAATCAGCGACTATCAGCACTT----GTTAA 1548
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