Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03369 and BPUM_1997

See Amino acid alignment / Visit BSNT_03369 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:53
# Commandline: needle
#    -asequence dna-align/BSNT_03369___trpC.1.24716.seq
#    -bsequence dna-align/BPUM_1997___trpC.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03369___trpC-BPUM_1997___trpC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03369___trpC-BPUM_1997___trpC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03369___trpC
# 2: BPUM_1997___trpC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 787
# Identity:     520/787 (66.1%)
# Similarity:   520/787 (66.1%)
# Gaps:          68/787 ( 8.6%)
# Score: 1551.5
# 
#
#=======================================

BSNT_03369___      1 ATGCTTGAAAAAATCAT--CAAACAAAAGAAAGAAGAAGTGAAAACACTG     48
                     ||||||.|..||||.||  ||..||||  ||||||.|..|..||||    
BPUM_1997___t      1 ATGCTTAATCAAATTATTGCACGCAAA--AAAGAACATATCCAAAC----     44

BSNT_03369___     49 GTT----TTGCCGGTAGA-GCAGCCTTTCGAGAAACGTTCATTTAAGGAG     93
                     |||    ||.||.|..|| |.|..|||| ||.|.|||.||||||||.||.
BPUM_1997___t     45 GTTACAGTTACCTGATGATGGACACTTT-GAAAGACGCTCATTTAAAGAA     93

BSNT_03369___     94 GCGCTGG----CAAGCCCGAATCGGTTTATCGGGTTGATTGCCGAAGTGA    139
                     ||.||.|    ||  |||  |.||.|..||.|||.|||||||.||.||||
BPUM_1997___t     94 GCCCTTGTGAACA--CCC--ACCGCTCGATTGGGCTGATTGCTGAGGTGA    139

BSNT_03369___    140 AGAAAGCATCGCCGTCAAAAGGGCTTATT-----AAAGAGGATTTTGTGC    184
                     |.||.|||||.||.||.|||||..|.|||     ||     ||||||..|
BPUM_1997___t    140 AAAAGGCATCTCCTTCCAAAGGAATCATTCAGCCAA-----ATTTTGATC    184

BSNT_03369___    185 CTGTGCAGATTGCAATAGACTATGAGGCTGCGAAGGCAGA-TGCGATT-T    232
                     ||.||||.|..||||.||..||.||.....||||.||.|| |||  || |
BPUM_1997___t    185 CTCTGCAAACAGCAAAAGCATACGAAAAATCGAATGCTGATTGC--TTAT    232

BSNT_03369___    233 CCGTTTTAACAGACACCCCGTTTTTTCAAGGGGAAAACAGT---TATTTA    279
                     |.||.||||||||....||.|||||||||||   |||.|.|   |||.|.
BPUM_1997___t    233 CAGTGTTAACAGATGAACCATTTTTTCAAGG---AAAGAATGAGTATCTT    279

BSNT_03369___    280 TCAGACGT---AAAGC---GTGCTGTTTCGATTCCTGTACTTAGAAAAGA    323
                     ||...|.|   |||.|   .|||...|.|.|||      ||.||||||||
BPUM_1997___t    280 TCCCTCATTAAAAAACACATTGCACGTCCCATT------CTAAGAAAAGA    323

BSNT_03369___    324 TTTTATTCTTGATTCTCTTCAAGTAGAGGAATCAAGAAGAATCGGAGCGG    373
                     |||.||..|.|||||..|.||..||||.||.||||||.|.|||||.||.|
BPUM_1997___t    324 TTTCATCATCGATTCCATACAGATAGAAGAGTCAAGACGTATCGGTGCAG    373

BSNT_03369___    374 ATGCCATATTGTTAATCGGCGAGGTGCTTGATCCCTTACACCTTCATGAA    423
                     |||||||.||.|||||.||.||.||||||||.||...|||.||.||||||
BPUM_1997___t    374 ATGCCATTTTATTAATTGGAGAAGTGCTTGAACCACAACAGCTGCATGAA    423

BSNT_03369___    424 TTATATCTTGAAGC--AGGTGAAAAGGGGATGGACGTGTTAGTGGAGGTT    471
                     .|.|||.|||||||  ||  |||||.||..|.||..|..|.||.||.|||
BPUM_1997___t    424 CTCTATATTGAAGCGAAG--GAAAAAGGATTAGATATTCTTGTCGAAGTT    471

BSNT_03369___    472 CATGATGCATCAACGCTAGAACAAATATTGAAAGTGTTCACACCCGACAT    521
                     ||||..|||...|||||.||||||||.||.||..|.|||||.||.||.||
BPUM_1997___t    472 CATGCAGCAGAGACGCTGGAACAAATTTTAAACCTATTCACCCCTGAAAT    521

BSNT_03369___    522 TCTCGGCGTAAATAATCGAAACCTAAAAACGTTTGAAACATCTGTAAAGC    571
                     ..|.|||||.|||||.|||||.||||||||.|||.|.|||.|.||..|.|
BPUM_1997___t    522 CATTGGCGTGAATAACCGAAATCTAAAAACCTTTAACACAACAGTTGAAC    571

BSNT_03369___    572 AGACAGAACAAATCGCATCTCTCGTTCCGAAAGAATCCTTGCTTGTCAGC    621
                     |.|||.||.|.||.||..|.||.|||||.||.||.|.|||.||.||.||.
BPUM_1997___t    572 AAACAAAAGAGATTGCCCCACTTGTTCCAAAGGATTGCTTACTAGTAAGT    621

BSNT_03369___    622 GAAAGCGG-----AATCGGTTCTTTAGAACATTTAACATTTGTCAATGAA    666
                     ||||||||     ||.||     ||.||..||.|.||.||||||||..||
BPUM_1997___t    622 GAAAGCGGTATTCAAACG-----TTTGATGATCTGACCTTTGTCAAAAAA    666

BSNT_03369___    667 CATGGGGCGCGAGCTGTACTTATCGGTGAATCATTGATGAGACAAACTTC    716
                     |||||.|||.|.|||||.|||.|.|||||||||||.||||||.||.|.||
BPUM_1997___t    667 CATGGAGCGAGTGCTGTTCTTGTAGGTGAATCATTAATGAGAGAACCATC    716

BSNT_03369___    717 TCAGCGTAAAGCAATCCATGCTTTGTTTGGGGAGTGA    753
                     .||....|||||..|.||..|.||.|||||.||.|||
BPUM_1997___t    717 ACAAGAAAAAGCCGTTCAGACGTTATTTGGAGAATGA    753


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_03369 and BPUM_1997

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
