Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03365 and BPUM_1994

See Amino acid alignment / Visit BSNT_03365 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:53
# Commandline: needle
#    -asequence dna-align/BSNT_03365___trpA.1.24716.seq
#    -bsequence dna-align/BPUM_1994___trpA.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03365___trpA-BPUM_1994___trpA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03365___trpA-BPUM_1994___trpA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03365___trpA
# 2: BPUM_1994___trpA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 859
# Identity:     575/859 (66.9%)
# Similarity:   575/859 (66.9%)
# Gaps:         110/859 (12.8%)
# Score: 1706.0
# 
#
#=======================================

BSNT_03365___      1 ATG------TTTAAATTGGATCTTCAACCAA--CAGAAAAATTGTTTATC     42
                     |||      |||.||||.|       |.|||  | ||.|||||.||.|||
BPUM_1994___t      1 ATGATCACTTTTCAATTAG-------AGCAAGGC-GAGAAATTATTCATC     42

BSNT_03365___     43 CCGTTTATTACGGCGGGCGATCCAGTTCCTGAGG---TTTCGATTGAACT     89
                     ||.|||||.|||||.||.||||| ||  |.||.|   |..||||.||..|
BPUM_1994___t     43 CCATTTATGACGGCAGGAGATCC-GT--CAGAAGAAATCACGATCGATTT     89

BSNT_03365___     90 GGCGAAGTCACTCCAAAAAGCAGGCGCCACA-GC-ATTGGAGCTTGGTGT    137
                     .||...|||.||.|||..|||.||.| |||| || ||| |||||.||.||
BPUM_1994___t     90 AGCTTTGTCCCTTCAAGCAGCCGGTG-CACATGCGATT-GAGCTAGGCGT    137

BSNT_03365___    138 TGCATACTCTGACCCGCTTGCAGACGGTCCGGTGATCCAGAGGGCTTCAA    187
                     |.|.|||||.||.|||||.|||||||||||.||.||.||.||.||.||.|
BPUM_1994___t    138 TCCTTACTCCGATCCGCTAGCAGACGGTCCTGTCATTCAAAGAGCCTCCA    187

BSNT_03365___    188 AGCGGGCACTTGATCAAGGAATGAATATCGTAAAGGCAATCGAATTAGGC    237
                     |..|.||.||..||||.||.||||||||||||||.||.||.|||||| ||
BPUM_1994___t    188 AAAGAGCTCTAAATCATGGCATGAATATCGTAAAAGCGATAGAATTA-GC    236

BSNT_03365___    238 GGAGAA-ATGAAAAAAAACGGAGTGAATATTCCGATTATCCTCTTTACGT    286
                     .|.||| ||||||||||||||.||.||.|||||..||||.||.|||||||
BPUM_1994___t    237 AGGGAAGATGAAAAAAAACGGTGTAAAAATTCCTGTTATTCTATTTACGT    286

BSNT_03365___    287 ATTATAATCCTGTGTTACAATTGAACAAAGAATACTTTTTCGCTTTACTG    336
                     ||||||||||||||||||||||..|||.||||||||||||||||||||||
BPUM_1994___t    287 ATTATAATCCTGTGTTACAATTAGACACAGAATACTTTTTCGCTTTACTG    336

BSNT_03365___    337 CAGGAAAATCATATT----GACGGTCTGCTTGTT----CCGGATCTGCCA    378
                     |...|||||||||||    |||        |.||    ||.||..||||.
BPUM_1994___t    337 CGCAAAAATCATATTTCGGGAC--------TCTTAACACCCGACTTGCCT    378

BSNT_03365___    379 CTAGAAGAAAGCA-ACAGCCTTCAAGAGGAATGTAAAAGCCATGAGGTGA    427
                     .|.|||||||||| ..|| ||.|||.||.|.|||.||....||||..|..
BPUM_1994___t    379 TTTGAAGAAAGCAGTGAG-CTGCAAAAGAACTGTCAATCATATGACATTT    427

BSNT_03365___    428 CGTATATTTCTTTGGTTGCGCCGAC----AAGCGAAAGCCG-TTTGAAAA    472
                     |.||||||||..|.|||||.||.||    ||| |||   || ||.|.|||
BPUM_1994___t    428 CATATATTTCGCTCGTTGCACCAACCAGTAAG-GAA---CGATTAGTAAA    473

BSNT_03365___    473 CCATTATTGAACAAGCCGAGGGCTTCGTCTACTGTGTGTCTTCTCTGGGT    522
                      .|||.|.||.||.||.||.||.||.||.||.|||||.||.|||||.|||
BPUM_1994___t    474 -TATTGTAGAGCAGGCAGAAGGTTTTGTGTATTGTGTTTCATCTCTTGGT    522

BSNT_03365___    523 GTGACCGGTGTCCG-CAA-----TGAGTTC-AATTCATCCGTGTACCCG-    564
                     ||.||.||||||.| |||     |||   | |||     ||..|| |.| 
BPUM_1994___t    523 GTAACAGGTGTCAGACAAACCTTTGA---CGAAT-----CGATTA-CTGA    563

BSNT_03365___    565 -TTCATTCGGAC-AGTGAAGAATCTCAG-CACTGTTCCGGTCGCTGTAGG    611
                      ||.|||| .|| ||||||..|.||.|| ||| .|.|||||.||.||.||
BPUM_1994___t    564 TTTTATTC-AACAAGTGAAACAGCTGAGTCAC-ATACCGGTTGCGGTCGG    611

BSNT_03365___    612 GTTCGGTATATCAAACCGTGAACAGGTCATAAAG-----ATGAATGAAAT    656
                     .||.|||||.||||...|.||.|||||     ||     ||||||.||.|
BPUM_1994___t    612 TTTTGGTATCTCAACAAGAGAGCAGGT-----AGACTCAATGAATAAACT    656

BSNT_03365___    657 TAGTGACGGTGTCGTAGTGGGAAGTGCGCTCGTCAGAAAAATAGAAGAAT    706
                     .||||||||||||||.||.||.|||||.||.||.|.||||||.||||||.
BPUM_1994___t    657 GAGTGACGGTGTCGTTGTAGGCAGTGCACTTGTGAAAAAAATTGAAGAAC    706

BSNT_03365___    707 TAAAGGACCGGCTCA----TCAGCGCTGAAACGAGAAA--TC-AGGCGCT    749
                     |..|.||     |||    |.|||    ||..||.|.|  || ||.||||
BPUM_1994___t    707 TTCACGA-----TCAATTGTTAGC----AAGTGATACACGTCAAGACGCT    747

BSNT_03365___    750 GCAGGAG--TTTGAGGATTATGCAATGGCGTTTAGCGGCTTGTA--CAGT    795
                     ..|.|||  |||||....|||||||...|.|||||...|.|.||  ||  
BPUM_1994___t    748 TTAAGAGAATTTGAAACCTATGCAAAAACATTTAGTCCCCTCTATTCA--    795

BSNT_03365___    796 TTAAAATGA    804
                     ||.||||||
BPUM_1994___t    796 TTCAAATGA    804


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_03365 and BPUM_1994

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
