Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03357 and BPUM_1988

See Amino acid alignment / Visit BSNT_03357 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:52
# Commandline: needle
#    -asequence dna-align/BSNT_03357___ypiF.1.24716.seq
#    -bsequence dna-align/BPUM_1988___ypiF.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03357___ypiF-BPUM_1988___ypiF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03357___ypiF-BPUM_1988___ypiF.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03357___ypiF
# 2: BPUM_1988___ypiF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 504
# Identity:     303/504 (60.1%)
# Similarity:   303/504 (60.1%)
# Gaps:         114/504 (22.6%)
# Score: 853.5
# 
#
#=======================================

BSNT_03357___      1 ATGAGGT-------GGAGAATCACTGATGCCAAGGA---CTATTTACAAG     40
                     ||||.||       ||||       |||||   |||   ||.|||||||.
BPUM_1988___y      1 ATGAAGTTTCACGCGGAG-------GATGC---GGATCGCTTTTTACAAT     40

BSNT_03357___     41 CTAAGGATTACATTGATACCGCTGTCATACCATTAATT--AACATAAGGG     88
                     ||||.||||||||||||||||||.||||.||||||.||  ||.|.|.|.|
BPUM_1988___y     41 CTAAAGATTACATTGATACCGCTATCATTCCATTAGTTGGAATAGATGCG     90

BSNT_03357___     89 TTAAT-----------AACCAT---TTTAAAATGGCGGCGGAGAAAGGCG    124
                       |||           ||||.|   |||                 |||.|
BPUM_1988___y     91 --AATCAAATCAAGCAAACCGTATCTTT-----------------AGGGG    121

BSNT_03357___    125 AGTTTACGCAGCTTCTCTCAGAAGAACTTGAAAGGCAG-TTAAAGGGACG    173
                     |||||||....|||.|..||||.||||||||||||||| |.|||||| ||
BPUM_1988___y    122 AGTTTACTATTCTTGTAGCAGAGGAACTTGAAAGGCAGCTGAAAGGG-CG    170

BSNT_03357___    174 GGTATATTTACTTCCGCCTTATACATATGTTGATAGAAATGAAATAACCG    223
                     |||.|.|.|..||||..|..|||||||||    ||||||| .|||.|.||
BPUM_1988___y    171 GGTCTTTCTTTTTCCATCACATACATATG----TAGAAAT-CAATGATCG    215

BSNT_03357___    224 ----------------TTCAAGGGCTTAAGGATTTGCGGGAAGAGCTGAT    257
                                     ||||  .|.|.|||.|.|.||..|||||.|    
BPUM_1988___y    216 AAAACTAGAAGACATCTTCA--CGATGAAGCAATCGCTTGAAGATC----    259

BSNT_03357___    258 AACGGAATTTCCGCATGTTGTCCTGCTCACATCTGACGAAAGTTGG--AG    305
                          |.||||..|||||.||..||.||.|||||||..|..|.|||  ||
BPUM_1988___y    260 -----ATTTTCAACATGTCGTATTGATCTCATCTGATCACGGGTGGAAAG    304

BSNT_03357___    306 AGC-TGAGGATGCGTTAG----GCAAAATGATTGTTACA-CCGTCTGTTC    349
                     ||| ||||..|  |||||    .||..||..||.|||.| |||   ||.|
BPUM_1988___y    305 AGCATGAGCCT--GTTAGTGAATCACTATTTTTATTAAAGCCG---GTCC    349

BSNT_03357___    350 CATTAGAGCATTTAAATGACTCTTTAA--AAAGAAAAATATTGGATGAAC    397
                     |..|.|||||||||||.|    |..||  ||||.|||| |.|.|.|.||.
BPUM_1988___y    350 CGCTCGAGCATTTAAAGG----TAGAATTAAAGCAAAA-AATCGTTCAAG    394

BSNT_03357___    398 GCACTGCTG----AAATTTTGAACGTTTTGTTACAGTTATGGAGCACTTC    443
                     .||.|| ||    |||||||||||.||||||||||....||||.|.||||
BPUM_1988___y    395 ACAGTG-TGGAACAAATTTTGAACTTTTTGTTACAAAAGTGGAACCCTTC    443

BSNT_03357___    444 ATAA    447
                     ||||
BPUM_1988___y    444 ATAA    447


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