Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03357 and BPUM_1988
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:52
# Commandline: needle
# -asequence dna-align/BSNT_03357___ypiF.1.24716.seq
# -bsequence dna-align/BPUM_1988___ypiF.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03357___ypiF-BPUM_1988___ypiF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03357___ypiF-BPUM_1988___ypiF.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03357___ypiF
# 2: BPUM_1988___ypiF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 504
# Identity: 303/504 (60.1%)
# Similarity: 303/504 (60.1%)
# Gaps: 114/504 (22.6%)
# Score: 853.5
#
#
#=======================================
BSNT_03357___ 1 ATGAGGT-------GGAGAATCACTGATGCCAAGGA---CTATTTACAAG 40
||||.|| |||| ||||| ||| ||.|||||||.
BPUM_1988___y 1 ATGAAGTTTCACGCGGAG-------GATGC---GGATCGCTTTTTACAAT 40
BSNT_03357___ 41 CTAAGGATTACATTGATACCGCTGTCATACCATTAATT--AACATAAGGG 88
||||.||||||||||||||||||.||||.||||||.|| ||.|.|.|.|
BPUM_1988___y 41 CTAAAGATTACATTGATACCGCTATCATTCCATTAGTTGGAATAGATGCG 90
BSNT_03357___ 89 TTAAT-----------AACCAT---TTTAAAATGGCGGCGGAGAAAGGCG 124
||| ||||.| ||| |||.|
BPUM_1988___y 91 --AATCAAATCAAGCAAACCGTATCTTT-----------------AGGGG 121
BSNT_03357___ 125 AGTTTACGCAGCTTCTCTCAGAAGAACTTGAAAGGCAG-TTAAAGGGACG 173
|||||||....|||.|..||||.||||||||||||||| |.|||||| ||
BPUM_1988___y 122 AGTTTACTATTCTTGTAGCAGAGGAACTTGAAAGGCAGCTGAAAGGG-CG 170
BSNT_03357___ 174 GGTATATTTACTTCCGCCTTATACATATGTTGATAGAAATGAAATAACCG 223
|||.|.|.|..||||..|..||||||||| ||||||| .|||.|.||
BPUM_1988___y 171 GGTCTTTCTTTTTCCATCACATACATATG----TAGAAAT-CAATGATCG 215
BSNT_03357___ 224 ----------------TTCAAGGGCTTAAGGATTTGCGGGAAGAGCTGAT 257
|||| .|.|.|||.|.|.||..|||||.|
BPUM_1988___y 216 AAAACTAGAAGACATCTTCA--CGATGAAGCAATCGCTTGAAGATC---- 259
BSNT_03357___ 258 AACGGAATTTCCGCATGTTGTCCTGCTCACATCTGACGAAAGTTGG--AG 305
|.||||..|||||.||..||.||.|||||||..|..|.||| ||
BPUM_1988___y 260 -----ATTTTCAACATGTCGTATTGATCTCATCTGATCACGGGTGGAAAG 304
BSNT_03357___ 306 AGC-TGAGGATGCGTTAG----GCAAAATGATTGTTACA-CCGTCTGTTC 349
||| ||||..| ||||| .||..||..||.|||.| ||| ||.|
BPUM_1988___y 305 AGCATGAGCCT--GTTAGTGAATCACTATTTTTATTAAAGCCG---GTCC 349
BSNT_03357___ 350 CATTAGAGCATTTAAATGACTCTTTAA--AAAGAAAAATATTGGATGAAC 397
|..|.|||||||||||.| |..|| ||||.|||| |.|.|.|.||.
BPUM_1988___y 350 CGCTCGAGCATTTAAAGG----TAGAATTAAAGCAAAA-AATCGTTCAAG 394
BSNT_03357___ 398 GCACTGCTG----AAATTTTGAACGTTTTGTTACAGTTATGGAGCACTTC 443
.||.|| || |||||||||||.||||||||||....||||.|.||||
BPUM_1988___y 395 ACAGTG-TGGAACAAATTTTGAACTTTTTGTTACAAAAGTGGAACCCTTC 443
BSNT_03357___ 444 ATAA 447
||||
BPUM_1988___y 444 ATAA 447
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