Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03354 and BPUM_1985

See Amino acid alignment / Visit BSNT_03354 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:52
# Commandline: needle
#    -asequence dna-align/BSNT_03354___qcrC.1.24716.seq
#    -bsequence dna-align/BPUM_1985___qcrC.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03354___qcrC-BPUM_1985___qcrC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03354___qcrC-BPUM_1985___qcrC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03354___qcrC
# 2: BPUM_1985___qcrC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 801
# Identity:     559/801 (69.8%)
# Similarity:   559/801 (69.8%)
# Gaps:          66/801 ( 8.2%)
# Score: 1868.0
# 
#
#=======================================

BSNT_03354___      1 ATGCACCGGGGCAAAGGGATGAAATTTGTAGGCGACTCAAGGATACCGGC     50
                     .||||..||||.|||||||||||.|||||.||.|||||.||.||.|||||
BPUM_1985___q      1 TTGCATAGGGGAAAAGGGATGAAGTTTGTCGGAGACTCTAGAATTCCGGC     50

BSNT_03354___     51 TGAAAAAAAGCCGAATATACCGAAGGATTATTCGGAGTATCCCGGTAAAA    100
                     .||||.|||.||.||.|||||.||.||.|||||.||.|||||.||.||||
BPUM_1985___q     51 AGAAAGAAAACCTAACATACCTAAAGACTATTCCGAATATCCGGGAAAAA    100

BSNT_03354___    101 CAGAGGCTTTCTGGCC-AAATTTCTTGTTAAAGGAATGGATGGTTGGAGC    149
                     ||||.||.||.||||| ||.|||||| ||||||||||||.|.||.||.||
BPUM_1985___q    101 CAGAAGCCTTTTGGCCGAACTTTCTT-TTAAAGGAATGGCTTGTAGGTGC    149

BSNT_03354___    150 TGTCTTTCTCATCGGTTTTCTCGTTTTGACGATTGTGCAT-CAGCCGCCT    198
                     .||.|||.|.||.||.|||||.||..|.||..|.||.||| || ||.||.
BPUM_1985___q    150 CGTTTTTTTAATTGGATTTCTTGTCCTAACTGTGGTTCATGCA-CCTCCG    198

BSNT_03354___    199 TTGGAGCGGATGGCGGACCCGACTGATACTGGTTATATTCCGCTGCCGGA    248
                     .|.|||||||||||.||.||.||.|||||.||.||||||||||||||.||
BPUM_1985___q    199 CTTGAGCGGATGGCTGATCCAACAGATACCGGCTATATTCCGCTGCCAGA    248

BSNT_03354___    249 TTGGTATTTTCTTTTCTTATACCAGCTGTTGAAGTATGAATACGCCGCCG    298
                     .||||||||.||.|||||.||||||.|.||.||.|||||||..||.||.|
BPUM_1985___q    249 CTGGTATTTCCTATTCTTGTACCAGTTATTAAAATATGAATTTGCTGCAG    298

BSNT_03354___    299 GAAGCTTTACAGTGGTCGGCGCCATGATTATGCCAGGTCTCGCTTTTGGG    348
                     |..|||.|||.||.||.||.||.|||||||||||.||..|.||.|||||.
BPUM_1985___q    299 GTGGCTATACGGTAGTTGGTGCGATGATTATGCCTGGGATTGCGTTTGGT    348

BSNT_03354___    349 GCCCTGCTTTTGGCTCCATTCCTAGACAGAGGGACAGAAAGAAGGCCG--    396
                     ||.|||||..|.||.|||||.||.||....||..|.|||.|.||.|||  
BPUM_1985___q    349 GCACTGCTGCTCGCACCATTTCTTGATTCTGGTCCTGAACGTAGACCGTA    398

BSNT_03354___    397 TGGAAGCGTCCGGTCGCTGTCGGTATGATGCTTCTGGCCATTTCCGCTGC    446
                     |.|||  |.|||||.||.||.||.||||||.|.||.||..|...|||.||
BPUM_1985___q    399 TAGAA--GACCGGTTGCAGTGGGGATGATGATCCTTGCAGTCGGCGCAGC    446

BSNT_03354___    447 TGTATTTTTGACGTGGCAGTCAGTTGCTACTCATGACTGGGCCAAG--GC    494
                     ...||.|||.||.|||.||||.||||||||||||||.||||  |||  ||
BPUM_1985___q    447 AACATATTTAACATGGGAGTCTGTTGCTACTCATGATTGGG--AAGCAGC    494

BSNT_03354___    495 AGAAGAACAGGGGAAAATCACAAAAGAAGCCGACATTGACACCAAT----    540
                     .|.|.|.||.||..||||.|..||||||||.||.|||||.||  ||    
BPUM_1985___q    495 GGCAAAGCAAGGTGAAATTAAGAAAGAAGCAGAAATTGATAC--ATCGGC    542

BSNT_03354___    541 -GCAGAAGGATATAAGGTCTTTA--AGG----AACAGGGCTGTATTTCTT    583
                      |||| ||.|||.||    ||||  |||    ||||    |||||.||.|
BPUM_1985___q    543 GGCAG-AGTATAAAA----TTTATCAGGAGCAAACA----TGTATCTCCT    583

BSNT_03354___    584 GCCATGGGGATAACCTTCAGGGAGGAGCGGCCGGGCCTTCATTGGTTGAC    633
                     |.||||||||||||.|.|||||.|||||.|||||.||.|||.|.||||||
BPUM_1985___q    584 GTCATGGGGATAACATGCAGGGCGGAGCAGCCGGACCGTCACTTGTTGAC    633

BSNT_03354___    634 AGCGGGCTGAAACCGGATGAAATCAAAAAAATAGCTGTAGAAGGGAAAGG    683
                     |.|||.||...|||.||.||.|||...||.||.|||||.|||||.|||||
BPUM_1985___q    634 AACGGTCTTGCACCTGAGGAGATCGCTAAGATTGCTGTTGAAGGAAAAGG    683

BSNT_03354___    684 CAAAATGCCGGCGGGTGTGTTCAAAGGAAATGATAAGCAACTCGAAGAAC    733
                     .||.|||||...||||.|.||.|||||.|.||||         |||||||
BPUM_1985___q    684 TAATATGCCTAAGGGTATCTTTAAAGGCAGTGAT---------GAAGAAC    724

BSNT_03354___    734 TTGCAAA-----------ATTTATTTCTG-----AAACAACCGCAAAATA    767
                     |||.|||           |||||  ||||     |||     .|.|||||
BPUM_1985___q    725 TTGAAAAGCTGTCTAAATATTTA--TCTGAGGTCAAA-----TCTAAATA    767

BSNT_03354___    768 A    768
                     |
BPUM_1985___q    768 A    768


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_03354 and BPUM_1985

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
