Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03352 and BPUM_1983
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:51
# Commandline: needle
# -asequence dna-align/BSNT_03352___ypjB.1.24716.seq
# -bsequence dna-align/BPUM_1983___ypjB.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03352___ypjB-BPUM_1983___ypjB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03352___ypjB-BPUM_1983___ypjB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03352___ypjB
# 2: BPUM_1983___ypjB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 912
# Identity: 526/912 (57.7%)
# Similarity: 526/912 (57.7%)
# Gaps: 225/912 (24.7%)
# Score: 1400.0
#
#
#=======================================
BSNT_03352___ 1 ATGAAACGAAAGC---TGACGATCTGTTTGTTGATTGCACTTATTTTT-- 45
||||||||||||| |..|||| |.|.|..||||||||
BPUM_1983___y 1 ATGAAACGAAAGCCAATCGCGAT----------AATTCTATTATTTTTTC 40
BSNT_03352___ 46 ---TATAATGGAAA-----TGCCAAGGCTGCAGAGCGGGGAAGC------ 81
|||.|..|..| ||||||.| |||.||||.|
BPUM_1983___y 41 TCGTATTACAGCCATCTGTTGCCAAAG-------GCGAGGAAACAGCAGC 83
BSNT_03352___ 82 -------CTCGAGGAATTGAATGATTTATCCGATACAGTCTTTCAAATGA 124
||..|.|||||.|..||..||||.|||.||.||||||||.|.|
BPUM_1983___y 84 TAGTGTGCTGCAAGAATTAACGGAACTATCAGATTCAATCTTTCAATTAA 133
BSNT_03352___ 125 CCCGACAGGCAAAATATGAAGAGGCGCTTCAAGTC---TTGGAGTATTTT 171
|..||||.||.||||||||.||||||.|.||.||| || ||||.||
BPUM_1983___y 134 CGAGACAAGCTAAATATGATGAGGCGTTACAGGTCGCATT---GTATGTT 180
BSNT_03352___ 172 GAAAAAACATTAAAATCCGCTGAGAA---------AAAACAG-CAAGACC 211
|||||.|||||.||| |||||||| ||..|.| |||
BPUM_1983___y 181 GAAAAGACATTTAAA---GCTGAGAATTGGCGCGGAACGCTGACAA---- 223
BSNT_03352___ 212 CCATGCTAACGGGATCCCAAATCCGTCAAATCACATTGGGCTATAATGAT 261
|| ||| ||.||.||.|||||.|||.|.||||||.|.|||
BPUM_1983___y 224 --AT----ACG------CAGATTCGACAAATTACAGTTGGCTATCAAGAT 261
BSNT_03352___ 262 AT--------GGTT--CGGAGTTTAAAGCAAGCTGATACATCAGACACAC 301
|| ||.| ||.|| .||| |..||| ||.|| |.|
BPUM_1983___y 262 ATCATAAAAGGGCTGCCGCAG---GAAG--AATTGA---ATGAG---CGC 300
BSNT_03352___ 302 -AAAAACTCAGAGCAGCCGCGCAGTTCAGGATGCTGATGGATGCGGTTGA 350
||||.||..|....|||.|.|||||.||.|||||..|.||||||.| .
BPUM_1983___y 301 GAAAAGCTTCGTTATGCCTCACAGTTTAGAATGCTACTCGATGCGAT--C 348
BSNT_03352___ 351 AAATCGG--TCTGACCCGCTTTGGGGCTCACTGGAAAAACCGATTATGGA 398
.|.||.| |||||.||.||||||||.||.|||||.||.||..||||||.
BPUM_1983___y 349 CAGTCAGACTCTGAGCCACTTTGGGGTTCGCTGGAGAAGCCCGTTATGGG 398
BSNT_03352___ 399 AGCTTTTACTGAACTGAAGCGAGATGTCCAAAAGAATGGAAGCA------ 442
..|||||.||..|.|||| |||||||..||||.|
BPUM_1983___y 399 GTCTTTTCCTACATTGAA-----------AAAAGAAGTGAAGGATCCGGA 437
BSNT_03352___ 443 --CAAGC----TTTCATGAAAAATGGAATGA---ATTTATCAGTTTATAT 483
||| | |||.||||||..|||||||| |.|| || ||||||.
BPUM_1983___y 438 GTCAA-CGACGTTTTATGAAACTTGGAATGAGCTAGTT-TC--TTTATAC 483
BSNT_03352___ 484 GACTTGATTTACCCCAGTCTTACAATCGATGTATCAGAGGATCAGCTTGA 533
||..||||.||.||.|||.|.||.||.|||||.|| ||.|||
BPUM_1983___y 484 GATATGATCTATCCGAGTTTAACCATTGATGTTTC---------GCCTGA 524
BSNT_03352___ 534 AACAGTCGGAA----------AACATATAGACGTTATTGAGCAAGAGGAA 573
|| ||..|.|| ||||.||.||.||.||||||||||..|||
BPUM_1983___y 525 AA-AGCTGCAAACGATTAAGCAACACATGGAAGTGATTGAGCAAGGTGAA 573
BSNT_03352___ 574 TTT-------CAGCAAATGACAGAGAGCACGAAGCTTGAACGGCTTTCCC 616
||| ||.|||.|| |.||.||||||||.||
BPUM_1983___y 574 TTTTTAAAAGCATCAAGTG-------GGACAAAGCTTGAGCG-------- 608
BSNT_03352___ 617 TTCTTCAGCATGACCTGAAAAA-----------TGTGTTTG---ACAGGG 652
|.||| ||...|.||||.|| |||||||| || |
BPUM_1983___y 609 --CCTCA-CAAAGCTTGAAGAAGATTTATCGAGTGTGTTTGCTCAC---G 652
BSNT_03352___ 653 TGGAGGAGGATGATGCCGATCCGTC---TTTACTCTGGGTGATGATTACA 699
||||..|.|||||.||.||.||.|| |||| |||||.||..|.|||
BPUM_1983___y 653 TGGATCAAGATGAGGCTGACCCATCGCTTTTA---TGGGTCATTTTAACA 699
BSNT_03352___ 700 ACCGGCAGTATCA--TCATTACTGCTCTT-ACCTATGTCGG-TTACAGAA 745
||.||.||.|||| |.||||..| || ||.|||||.|| ||.|.|||
BPUM_1983___y 700 ACAGGAAGCATCATTTTATTAACG---TTAACGTATGTAGGATTTCGGAA 746
BSNT_03352___ 746 AGTACAAGGCGGAAAAAAACAAGCTGAA--AAAAAGG-------GACTAC 786
| |||...||.||.|||.|.|| ||| |||||.| |||||.
BPUM_1983___y 747 A-TACCGTGCTGAGAAAGAGAA---GAAACAAAAACGACAAGCTGACTAT 792
BSNT_03352___ 787 CCTAAATAA--- 795
||.||||.|
BPUM_1983___y 793 CCGAAATCATAA 804
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