Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03350 and BPUM_1982

See Amino acid alignment / Visit BSNT_03350 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:51
# Commandline: needle
#    -asequence dna-align/BSNT_03350.1.24716.seq
#    -bsequence dna-align/BPUM_1982___ypjC.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03350-BPUM_1982___ypjC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03350-BPUM_1982___ypjC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03350
# 2: BPUM_1982___ypjC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 894
# Identity:     651/894 (72.8%)
# Similarity:   651/894 (72.8%)
# Gaps:          42/894 ( 4.7%)
# Score: 2259.0
# 
#
#=======================================

BSNT_03350         1 ATGCTTGGAGAAATTAGATTAAAAAACATATTTTTTATTTTAATCGGAGC     50
                     .||||...|||||||.|..|.||.||.||..|.|||||||||||.|||.|
BPUM_1982___y      1 TTGCTAAAAGAAATTCGTCTTAAGAATATCGTATTTATTTTAATAGGATC     50

BSNT_03350        51 GGCAATTTTTTCATTTGG-CTTGGTTCATTTCAATATGCAGAACAATCTG     99
                     .||.||||||||.||.|| ||| ||||||||.|||||||||||||||.||
BPUM_1982___y     51 TGCGATTTTTTCTTTCGGTCTT-GTTCATTTTAATATGCAGAACAATTTG     99

BSNT_03350       100 GCTGAGGGCGGTTTTACAGGTATTACACTTTTGCTT---TATGCCCTTTT    146
                     ||.||.|||||.||||||||||||||||   |||||   |||...||.||
BPUM_1982___y    100 GCGGAAGGCGGATTTACAGGTATTACAC---TGCTTTTATATTTTCTATT    146

BSNT_03350       147 CCACATCAGCCCCTCTATCTCGAACCTGGTATTGAACATCCCGATTTTTT    196
                     ||||||...|||.||.||.||.|||||.||.||.|||||.|||||.||||
BPUM_1982___y    147 CCACATTGACCCATCCATTTCAAACCTTGTCTTAAACATTCCGATCTTTT    196

BSNT_03350       197 TTATTGGCTGGCGTTTGCTCGGCAGGACAATGTTTGTTTATACCCTTGTC    246
                     ||||.||||||....||||||||||.||.||||||..||||||..||||.
BPUM_1982___y    197 TTATCGGCTGGAAAATGCTCGGCAGAACCATGTTTACTTATACAATTGTA    246

BSNT_03350       247 GGCACTGT-AGCCTTGTCTTTGTTCCTCAGCATCTTTCAGCGATATGAAA    295
                     |||||.|| ||.||| |||.|.||.|||..||||||.|||||.|.|.|||
BPUM_1982___y    247 GGCACCGTCAGTCTT-TCTGTCTTTCTCGCCATCTTCCAGCGCTTTCAAA    295

BSNT_03350       296 TCCATATGCCCCTTCAGCACGACTTAGCGCTCGCCGCTTTATTTGCCGGC    345
                     |.||||||||.|||||||||||.||.||.||.|||||..|.|||||.||.
BPUM_1982___y    296 TACATATGCCTCTTCAGCACGATTTGGCCCTTGCCGCGCTCTTTGCTGGT    345

BSNT_03350       346 GTATTCATCGGAGCCGGACTGGGTATTATTTTTAAGTTCGGCGGTACGAC    395
                     ||.||.||||||.|.||.||.||.||.||.|||||||||||.|||||.||
BPUM_1982___y    346 GTGTTTATCGGAACAGGCCTTGGAATCATCTTTAAGTTCGGTGGTACTAC    395

BSNT_03350       396 AGGCGGTGTTGATATCATCGCACGTTTAGTGAATAAGTATTTTGGGATC-    444
                     .||.||||||||.|||||||||.|..|..|.||.|||.|||     ||| 
BPUM_1982___y    396 CGGTGGTGTTGACATCATCGCAAGACTCATCAACAAGCATT-----ATCA    440

BSNT_03350       445 ----CCGATGGGCAGAACGATGTTTGCTTTCGATGCCTGCGTCATCATTT    490
                         .|.|||||..||||.|||||....|||||.||.||||||||.|...
BPUM_1982___y    441 AGTGGCTATGGGGCGAACAATGTTCATCTTCGACGCTTGCGTCATTACGA    490

BSNT_03350       491 TGTCTTTGCTTACTTATCTCTCCTATAAAGAAGCGATGTATACGCTGGTA    540
                     |.|||   |||||||||.|....||.||||||||.|||||||||||.||.
BPUM_1982___y    491 TTTCT---CTTACTTATTTAAATTACAAAGAAGCCATGTATACGCTCGTC    537

BSNT_03350       541 GCTGTATTTGTAGCGGC-AAGATTAATCGATTTTATTCAGGAAGGCGGAT    589
                     ||.||||||||.||.|| ||| .|.||.||.||.||.||.|||||||..|
BPUM_1982___y    538 GCAGTATTTGTTGCTGCGAAG-GTCATTGACTTCATGCAAGAAGGCGCTT    586

BSNT_03350       590 ACGCTGCTAAAGGCGCTACGATCATCTCCTCGAAAA--ACGACCTGATTC    637
                     ||||.||.||||||||.|.||||||.||  .|||||  |.|||.|.||||
BPUM_1982___y    587 ACGCAGCCAAAGGCGCCATGATCATATC--TGAAAAAGATGACATCATTC    634

BSNT_03350       638 AGAAAAAGATTCTTGAAGAAATGGAACGTGGCGTCACCATTTTGAAAGGA    687
                     |.||.||.|||...||.||||||||.||.||.||||||.||||.|||||.
BPUM_1982___y    635 AAAAGAAAATTACAGAGGAAATGGAGCGAGGTGTCACCGTTTTAAAAGGG    684

BSNT_03350       688 CAAGGTTCCTACACAAAAGAGGATATAG----ATGTACTTTATTGTGTGG    733
                     ...|||||.||.||||||.|||    ||    |.||.||||||||.||.|
BPUM_1982___y    685 GTTGGTTCTTATACAAAACAGG----AGCGCAACGTCCTTTATTGCGTCG    730

BSNT_03350       734 TGCCGAAAAACGAA-TTGGTGATGCTGAAAAGCGTGATTAACTCCATTGA    782
                     |.||||||||.||| |||...|| ||.||||||||..|.|.|||..|.||
BPUM_1982___y    731 TCCCGAAAAATGAACTTGTCCAT-CTCAAAAGCGTCGTGACCTCAGTCGA    779

BSNT_03350       783 TCCCCATGCCTTTGTAGCGGTAAGCGATGTTCACGATGTGCTCGGAGAAG    832
                     |||.|||||.||||||.|.||.||.||.||.||.|||||.||.||.||||
BPUM_1982___y    780 TCCTCATGCGTTTGTATCCGTCAGTGACGTCCATGATGTACTTGGGGAAG    829

BSNT_03350       833 GATTTACGCTTGATGAAAATAAAAATCCGCT---TCCGCGCTGA    873
                     |.||.||..|.||||||.|.|||||.|||||   |||||..|.|
BPUM_1982___y    830 GCTTCACATTAGATGAACACAAAAAGCCGCTTAATCCGCATTAA    873


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_03350 and BPUM_1982

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
