Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

DNA alignment: BSNT_03349 and BPUM_1981

See Amino acid alignment / Visit BSNT_03349 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:51
# Commandline: needle
#    -asequence dna-align/BSNT_03349___ypjD.1.24716.seq
#    -bsequence dna-align/BPUM_1981___ypjD.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03349___ypjD-BPUM_1981___ypjD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03349___ypjD-BPUM_1981___ypjD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03349___ypjD
# 2: BPUM_1981___ypjD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 343
# Identity:     260/343 (75.8%)
# Similarity:   260/343 (75.8%)
# Gaps:          14/343 ( 4.1%)
# Score: 980.5
# 
#
#=======================================

BSNT_03349___      1 ---GTGAGTGATAAAACAATGAAAGACATACAGGCTGAAGTAGACCGTTA     47
                        ..||.|||.|||||..||....||.|.|||...||||||||...|||
BPUM_1981___y      1 ATGACGAATGAAAAAACGCTGCGTTACGTGCAGCAAGAAGTAGATGATTA     50

BSNT_03349___     48 CATCGGCCAATTTAAAGAAGGATATTTTAGCCCGCTGGCCATGATGGCGA     97
                     |||.||.||||||||||||||.|||||.||||||||.|||||||||||..
BPUM_1981___y     51 CATAGGACAATTTAAAGAAGGCTATTTCAGCCCGCTTGCCATGATGGCCC    100

BSNT_03349___     98 GGCTGACTGAAGAACTGGGCGAGCTCGCCAGAGAAGTGAATCACCGTTAT    147
                     |.|||||.||||||.|.||||||||.||.|||||.||.||.||....|||
BPUM_1981___y    101 GCCTGACAGAAGAATTAGGCGAGCTAGCAAGAGAGGTCAACCATTACTAT    150

BSNT_03349___    148 GGAGAAAAACCAAAAAAAGCGACTGAAGATGATAAAAGCATGGAAGAGGA    197
                     ||||||||.||.||||||.|.||.|||...||.||||||||||||||.||
BPUM_1981___y    151 GGAGAAAAGCCGAAAAAAACAACGGAAACAGAAAAAAGCATGGAAGAAGA    200

BSNT_03349___    198 AATGGGCGATGTGCTATTTGTATTGGTT----TGTTTAGCCAACTCTCTT    243
                     |||.||||||||..|||||||    |||    |||.|.||.||.||.||.
BPUM_1981___y    201 AATTGGCGATGTTTTATTTGT----GTTAACATGTCTCGCTAATTCACTA    246

BSNT_03349___    244 GATATCTCTTTAGAGGAAGCTCACGACCGAGTCATGCATAAATTTAATAC    293
                     |||||.||.|||||||||||.||.||.||.||.|||||||||||.|||||
BPUM_1981___y    247 GATATATCATTAGAGGAAGCACATGATCGTGTGATGCATAAATTCAATAC    296

BSNT_03349___    294 AAGAGATAAAGATCGCTGGACCAGAAAAGAAGAAGGAAAGTAG    336
                     .|||||.|||||.||||||||  ||||| |||||||.||||||
BPUM_1981___y    297 TAGAGACAAAGACCGCTGGAC--GAAAA-AAGAAGGGAAGTAG    336


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.