Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03348 and BPUM_1980

See Amino acid alignment / Visit BSNT_03348 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:51
# Commandline: needle
#    -asequence dna-align/BSNT_03348___dapB.1.24716.seq
#    -bsequence dna-align/BPUM_1980___dapB.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03348___dapB-BPUM_1980___dapB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03348___dapB-BPUM_1980___dapB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03348___dapB
# 2: BPUM_1980___dapB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 826
# Identity:     607/826 (73.5%)
# Similarity:   607/826 (73.5%)
# Gaps:          44/826 ( 5.3%)
# Score: 2170.5
# 
#
#=======================================

BSNT_03348___      1 ATGTCAAACGAAACAATTAAAGTAGTCATTGCGGGACCGCGTGGAAGAAT     50
                     |||.|.||..||||.||.||||||||.||.||.|||.|..|.||||||||
BPUM_1980___d      1 ATGACGAATCAAACCATCAAAGTAGTAATCGCTGGAGCAAGAGGAAGAAT     50

BSNT_03348___     51 GGGGCAGGAAGCTGTTAAATTGGCAGA----ACGAACACCTCATTTTGAC     96
                     ||||...||||||||.||..|||||||    ||||.|    ||||||||.
BPUM_1980___d     51 GGGGATAGAAGCTGTGAAGCTGGCAGAAGAGACGAGC----CATTTTGAG     96

BSNT_03348___     97 CTTGTCGGGGCCATAGACCATACATACGATCAG--CAAAAATTATCTGAT    144
                     ||.||.|..|||.|.||.||..|..||||  ||  .||||||||||||||
BPUM_1980___d     97 CTAGTGGCAGCCCTTGATCACGCGCACGA--AGGAAAAAAATTATCTGAT    144

BSNT_03348___    145 GTGATGC---------CTGTTGAGTCAGATGCTTTCATTTACACAGATAT    185
                     |||||.|         |||..|.|.||         ||.||.||||||||
BPUM_1980___d    145 GTGATTCATACAACATCTGAGGCGCCA---------ATCTATACAGATAT    185

BSNT_03348___    186 CCATGCCTG-CTTTACAGAAACACAACCGGATGTCTTGATTGATTTAACA    234
                     ..|||..|| |||| ||||.|||..|||.||||||||.||||||||.||.
BPUM_1980___d    186 TGATGTGTGTCTTT-CAGAGACAGCACCTGATGTCTTAATTGATTTGACG    234

BSNT_03348___    235 ACGCCCGAAATCGGAAAAGTACATACAAAAATTGCATTAGAGCACGGAGT    284
                     ||.||.|||||.|||||||||||||||||||..||..|.||.||.||.||
BPUM_1980___d    235 ACACCAGAAATAGGAAAAGTACATACAAAAAAAGCGCTTGAACATGGCGT    284

BSNT_03348___    285 CCGTCCAGTTGTCGGAACAACCGGTTTCTCAGAAGCTGATTTAAAAGAGC    334
                     .||||||||.||||||||.||.||.||.||.|||||||||.|.|||||||
BPUM_1980___d    285 ACGTCCAGTCGTCGGAACCACTGGATTTTCTGAAGCTGATCTGAAAGAGC    334

BSNT_03348___    335 TCACATC-TTTAACAGAAGAAAAAGGGATCGGAGCCATCATCGCGCCAAA    383
                     || ||.| .||||||||||||||.||.||.||....||.||.||.|||||
BPUM_1980___d    335 TC-CAGCAATTAACAGAAGAAAAGGGCATAGGCTGTATTATTGCACCAAA    383

BSNT_03348___    384 TTTTGCGCTCGGTGCGATACTGATGATGAAATTTTCAAAAATGGCTGCCA    433
                     .|||||..||||||||.|..|.||||||||.|||.|.||||||||.||.|
BPUM_1980___d    384 CTTTGCTGTCGGTGCGGTCTTAATGATGAAGTTTGCCAAAATGGCAGCAA    433

BSNT_03348___    434 ACTATTTTGAGGATGTTGAGATTATTGAGCTTCATCATGACCAGAAGCTT    483
                     |.||.|||...||.|||||.||.|||||||||||.|||||..|.||.||.
BPUM_1980___d    434 ATTACTTTCCTGACGTTGAAATCATTGAGCTTCACCATGATAAAAAACTA    483

BSNT_03348___    484 GACGCACCAAGCGGAACTGCGCTTAAAACAGCGGAAATGATTTCAGAAGT    533
                     ||.||.||||||||.||||..||||||||.||.|||||||||.|||||||
BPUM_1980___d    484 GATGCTCCAAGCGGTACTGGTCTTAAAACTGCTGAAATGATTGCAGAAGT    533

BSNT_03348___    534 CCGTAAAGAAAAGC----AGCAAGGACATCCGGATGAAAAAGAAATTCTC    579
                        ||.|| |||||    |||||||||||||.|||||.||||||.|..|.
BPUM_1980___d    534 ---TAGAG-AAAGCAAAAAGCAAGGACATCCAGATGAGAAAGAATTAATA    579

BSNT_03348___    580 CCAGGAGCAAGAGGAGCGGAGCAAAACGGCATTCGCTTGCACAGCGTCCG    629
                     ..|||.|||.||||.||.||..|..||||.||.|||.||||||||||..|
BPUM_1980___d    580 GAAGGTGCACGAGGCGCAGATTATGACGGGATCCGCCTGCACAGCGTAAG    629

BSNT_03348___    630 TCTTCCGGGACTGATCGCGCATCAGGAGGTCATGTTCGGCATGGATGGCC    679
                     .|||||.||..||||.||.|||||.||.||..|.||.||.|||||.||.|
BPUM_1980___d    630 GCTTCCAGGTATGATTGCACATCAAGAAGTACTATTTGGAATGGACGGAC    679

BSNT_03348___    680 AAACGCTTCA-GATACGCCATGATTCTTATAACCGGGCTTCTTTCATGTC    728
                     |.|||| ||| .||.||.|||||||||||||||||.||.||.||.|||||
BPUM_1980___d    680 AGACGC-TCACCATTCGTCATGATTCTTATAACCGCGCCTCATTTATGTC    728

BSNT_03348___    729 AGGCGTTAAACTGTCAGTCGAACAAGTCATGAAGATTGATCAGCTTGTGT    778
                     |||.||.||.||.|||||.||||||||||||.|.||||||||.||.||.|
BPUM_1980___d    729 AGGTGTAAAGCTTTCAGTTGAACAAGTCATGCACATTGATCAACTCGTCT    778

BSNT_03348___    779 ACGGTTTAGAAAATATCATTGATTAG    804
                     |.||||||||||||||||||||.||.
BPUM_1980___d    779 ATGGTTTAGAAAATATCATTGACTAA    804


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_03348 and BPUM_1980

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
