Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03347 and BPUM_1979

See Amino acid alignment / Visit BSNT_03347 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:51
# Commandline: needle
#    -asequence dna-align/BSNT_03347___mgsA.1.24716.seq
#    -bsequence dna-align/BPUM_1979___mgsA.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03347___mgsA-BPUM_1979___mgsA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03347___mgsA-BPUM_1979___mgsA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03347___mgsA
# 2: BPUM_1979___mgsA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 436
# Identity:     303/436 (69.5%)
# Similarity:   303/436 (69.5%)
# Gaps:          38/436 ( 8.7%)
# Score: 997.0
# 
#
#=======================================

BSNT_03347___      1 ATGAAAATTGCTTTGATCGCGCATGACAAGAAAAAACAG-GATATGGTTC     49
                     |||||.||||||||.|||||.||.||.||||||||| || ||.|||.|.|
BPUM_1979___m      1 ATGAACATTGCTTTAATCGCTCACGATAAGAAAAAA-AGTGACATGATCC     49

BSNT_03347___     50 AATTTACGACTGCCTATCGGGATAT-TTTAAAGAATCATGATCTATACGC     98
                     |||||.|.|.|||.||.||.||||| ||...|| |||||...||.|||||
BPUM_1979___m     50 AATTTGCCATTGCGTACCGTGATATATTGGCAG-ATCATACACTTTACGC     98

BSNT_03347___     99 AACCGGAACCACAGGGTTGAAAATTCAAGAGGCGACAGGTCTTCAAATTG    148
                     |||.||.||.|||||.||||.|.|..||||.|||||.||.||||..|||.
BPUM_1979___m     99 AACAGGGACTACAGGTTTGAGAGTGAAAGAAGCGACGGGGCTTCCCATTC    148

BSNT_03347___    149 AACGTTTTCAATCCGGCCCTTTAGGGGGAGACCAGCAAATCGGTGCACTG    198
                     |.|||||.||.||.|||||..|.||.|||||.|||||.||.|||||..|.
BPUM_1979___m    149 ATCGTTTCCAGTCAGGCCCGCTTGGAGGAGATCAGCAGATTGGTGCTTTA    198

BSNT_03347___    199 ATCGCTGCCAATGCACTCGATCTTGTCATTTTTTTGCGCGACCCGCTGAC    248
                     ||.||||..||||||.|.||||||||..|.|||||..|.||||||||.||
BPUM_1979___m    199 ATTGCTGATAATGCAATGGATCTTGTGCTCTTTTTTAGAGACCCGCTTAC    248

BSNT_03347___    249 CGCGCAGCCGCATGAACCGGATGTCTCGGCATTAATCCGGTTATGTGATG    298
                     |||||||||||||||.||.|||||.||.|||.|.||.|||.|.||.||||
BPUM_1979___m    249 CGCGCAGCCGCATGAGCCAGATGTATCTGCACTCATTCGGCTTTGCGATG    298

BSNT_03347___    299 TGTATTCCATTCCGCTCGCCACAAATATGGGTACTGCGGAAATTCTTGTG    348
                     |||||.|.||.||.||.|||||.||||||||.||.||.||||||.|.||.
BPUM_1979___m    299 TGTATACGATCCCACTAGCCACCAATATGGGGACCGCAGAAATTTTAGTC    348

BSNT_03347___    349 CGCACACTT-GATGAAGGT--GTTTTCGAATTCCGTGACCTTCT------    389
                     .|.| |.|| .||.|||||  ||||  ||.||.||.||   |.|      
BPUM_1979___m    349 AGGA-ATTTAAATAAAGGTACGTTT--GATTTTCGAGA---TGTAGCAAA    392

BSNT_03347___    390 --TCGGGGAGAAGAGCCGAATGTATAA---------    414
                       .|||.| |||    |.||||   ||         
BPUM_1979___m    393 AAACGGAG-GAA----CAAATG---AAACGACTTGA    420


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