Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03345 and BPUM_1977
See
Amino acid alignment /
Visit
BSNT_03345 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:51
# Commandline: needle
# -asequence dna-align/BSNT_03345___ypjH.1.24716.seq
# -bsequence dna-align/BPUM_1977.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03345___ypjH-BPUM_1977.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03345___ypjH-BPUM_1977.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03345___ypjH
# 2: BPUM_1977
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1233
# Identity: 795/1233 (64.5%)
# Similarity: 795/1233 (64.5%)
# Gaps: 186/1233 (15.1%)
# Score: 2513.0
#
#
#=======================================
BSNT_03345___ 1 ATGAGAAAACTAAAAATAGGAATCACATGCTATCCGAGCGTTGGAGGCTC 50
||||.|||||||||..|.||||||||.||.|||||.||.||.||.||.||
BPUM_1977 1 ATGAAAAAACTAAAGGTCGGAATCACTTGTTATCCAAGTGTCGGCGGATC 50
BSNT_03345___ 51 AGGTATCATTGCGACAGAACTGGGGAAGCAGCTT-GCTGAAAAGGGACAT 99
.||.||.||||||||.|||||.||.||.| |.|| ||||||||.||.||.
BPUM_1977 51 GGGCATTATTGCGACGGAACTTGGAAAAC-GTTTAGCTGAAAAAGGGCAC 99
BSNT_03345___ 100 GAAATCCATTTCATCACATCAAGCATTCCGTTTAGACTGAATACA-TATC 148
||..|.||||||||.||.|||||.|||||||||||.||.||||.| |.|
BPUM_1977 100 GATGTTCATTTCATTACCTCAAGTATTCCGTTTAGGCTCAATAAAGTGT- 148
BSNT_03345___ 149 ATCCCAATATTCATTTTCATGAAGTTGAGGTTAATCAATATGCTGTTTTT 198
||||.||||||.||||||||||.||.||.||.||||||||.|||||||||
BPUM_1977 149 ATCCGAATATTTATTTTCATGAGGTGGATGTCAATCAATACGCTGTTTTT 198
BSNT_03345___ 199 AAGTATCCTCCGTATGA-TTTGACATTGGCAAGCAAAATCGCAGAGGTGG 247
.|.|||||.||.||||| .||| ||||.|||||.|||.|.|||||.||.|
BPUM_1977 199 CAATATCCGCCTTATGACCTTG-CATTAGCAAGTAAACTGGCAGAAGTCG 247
BSNT_03345___ 248 CGGAACGGGAGAATTTAGACATTATCCATGCTCACTATGCTCTCCCGCAT 297
|...|||.|||||..|.||.|||||.||.||.||.|||||..|.||.||.
BPUM_1977 248 CAAGACGAGAGAAGCTTGATATTATTCACGCGCATTATGCGGTGCCTCAC 297
BSNT_03345___ 298 GCCGTTTGCGCCTATCTT-GCAAAACAAATG-CT-GAAACGCAATATCGG 344
|||||.||.||.|| ||| ||.||.|||||| || ||.|| ||.|
BPUM_1977 298 GCCGTCTGTGCGTA-CTTAGCGAAGCAAATGACTGGACAC------TCTG 340
BSNT_03345___ 345 CA----TTGTTACAACTTTGCATGGCACGGATATCACGGTGTTAGGTTAT 390
.| ||||.||.||..|.|||||.||||||||.|||||.|||||.|||
BPUM_1977 341 TAAAAGTTGTCACGACGCTTCATGGGACGGATATTACGGTTTTAGGCTAT 390
BSNT_03345___ 391 GATCCGTCTCTAAAAGATCTGATCCGTTTTGCTATTGAGTCATCAGACAG 440
|||||.||..||||.||..|.||.||.|||||.|||||.|||||||||.|
BPUM_1977 391 GATCCATCATTAAAGGAAGTCATTCGCTTTGCAATTGAATCATCAGACCG 440
BSNT_03345___ 441 GGTGACGGCCGTCTC---CTCAGCGCTT-GCGGCTGAAACGTACGATTTA 486
|||.||.||.||.|| .||| || ||.||..|.||||||||..|.
BPUM_1977 441 GGTAACAGCGGTGTCGCATTCA----TTAGCTGCGCAGACGTACGACCTC 486
BSNT_03345___ 487 ATTAAACCGGAGAAAAAAATTGAAACGATTTATAACTTTATAGACGAGCG 536
||.||||||.|.|||||.||.|||||.||..||||.|||.|.||.|| |
BPUM_1977 487 ATCAAACCGAATAAAAAGATCGAAACAATCCATAATTTTGTCGATGA--G 534
BSNT_03345___ 537 CGTGTAT------CTGAAGAAAAACACA--GCGGTGATTAAAGAGAAAC- 577
||||||| .|||.| |.|||| |.|.|| ||||||.||
BPUM_1977 535 CGTGTATACTTGCGTGATG---ATCACAATGTGCTG----AAGAGACACT 577
BSNT_03345___ 578 ATGGAATTTTACCAGATGAAAAAGTCGTCATCCATGTGTCCAACTTTAGA 627
||||..|||||....|||||||.||||||||||||||.||.||.||..|.
BPUM_1977 578 ATGGTCTTTTAGATCATGAAAAGGTCGTCATCCATGTATCGAATTTCCGC 627
BSNT_03345___ 628 AAGGTTAAACGCGTGCAGGACGTCATCCGTGTGTTCCGCAATATCGCTGG 677
|||||.||.||.|||||.||.|||||.|.|||.||....||.|||.|||
BPUM_1977 628 AAGGTGAAGCGGGTGCATGATGTCATTCATGTATTTAAAAAAATCTCTG- 676
BSNT_03345___ 678 CAAAAC----GAAAGCGAAGCTGCTTTTAGTCGGAGACGGTCCGGAGAAA 723
||| |||.||.||.|||||..|..|.||.||.|||||.||.|||
BPUM_1977 677 ---AACAGGTGAATGCAAAACTGCTGCTCATTGGGGATGGTCCTGAAAAA 723
BSNT_03345___ 724 TCGACAGCCTGCGAGCTTATCAGAAAATATGGCTTGGA-----AGACCAA 768
|||...|..|||||.||..|.|.||| |||.||| |||.|..
BPUM_1977 724 TCGGTTGTTTGCGAACTCGTGAAAAA-----GCTGGGACTAACAGATCGC 768
BSNT_03345___ 769 GTCTTAATGCTTGGAAATCAAGACCGTGTTGAAGAGCTTTATTCTATTAG 818
||.|||.|..|.|||||.|||||....||.||||||||.|||||.||.||
BPUM_1977 769 GTGTTATTTTTAGGAAAGCAAGAGAAAGTAGAAGAGCTGTATTCCATCAG 818
BSNT_03345___ 819 CGATTTGAAGCTGCTGCTATCTGAAAAAGAAAGCTTTGGCCTTGTCCTGC 868
.||||||||||||||.||||||||.|||||.|||||.||.||.||.||.|
BPUM_1977 819 TGATTTGAAGCTGCTTCTATCTGAGAAAGAGAGCTTCGGACTAGTGCTTC 868
BSNT_03345___ 869 TTGAAGCGATGGCTTGCGGAGTGCCTTGTATTGGAACAAACATTGGCGGT 918
||||.||.|||||.||.||.||.||.||||||||.||..|..|||||||.
BPUM_1977 869 TTGAGGCAATGGCATGTGGTGTCCCATGTATTGGGACTGATGTTGGCGGA 918
BSNT_03345___ 919 ATCCCTGAGGTTATAAAAAACAATGTGAGCGGATTTTTGGTGGATGTCGG 968
||.||.||.||.||.|.|.| ||| |||
BPUM_1977 919 ATTCCAGAAGTCATTACACA-----------------TGG-GGA------ 944
BSNT_03345___ 969 TGATGTTACGGCCGCAACAG----------CCCGCGCGATGAGCATTTTA 1008
||||| |||||.||.||| |.||
BPUM_1977 945 ---------------AACAGGTTTCCTTGTCCCGCTCGGTGA----TATA 975
BSNT_03345___ 1009 GAAGATGAACAGCTAA----GCAATCGTTTTA--CAAAGGCGGCAATAGA 1052
||.|..| ||||||| |||.||..|.|| |||||.| |.||.
BPUM_1977 976 GACGCGG--CAGCTAAACACGCAGTCTCTATACTCAAAGAC----AAAGC 1019
BSNT_03345___ 1053 GATGCTTGA--AAATG-------------------------------AAT 1069
|.|.|.||| ||.|| |.|
BPUM_1977 1020 GCTTCATGAGCAAGTGTCGGCGGCGGCCCAGTCTAGCGTTCAAGCCCATT 1069
BSNT_03345___ 1070 TTTCTTCTAAAAAAATTGTCAGCCAGTATGAACAGATTTA---------- 1109
||||||||.||||||||||.||..|.||||||.||.||||
BPUM_1977 1070 TTTCTTCTGAAAAAATTGTAAGTGAATATGAAGAGCTTTACCTAGAATTG 1119
BSNT_03345___ 1110 --------TGCCGATTTAGCAGAACCGGAGTGA 1134
||..||| ||||..||.|||
BPUM_1977 1120 ATCGAAGGTGATGAT------GAACATGAATGA 1146
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.