Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03344 and BPUM_1976
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:51
# Commandline: needle
# -asequence dna-align/BSNT_03344___cca.1.24716.seq
# -bsequence dna-align/BPUM_1976___cca.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03344___cca-BPUM_1976___cca.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03344___cca-BPUM_1976___cca.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03344___cca
# 2: BPUM_1976___cca
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1365
# Identity: 777/1365 (56.9%)
# Similarity: 777/1365 (56.9%)
# Gaps: 333/1365 (24.4%)
# Score: 2041.0
#
#
#=======================================
BSNT_03344___ 1 ATGGAAAAAGTTTTTATCAAAGCAC--TTCCC----GTGCTCCGCATCTT 44
||.||.|.|| |||.| |.|.|||..||.||
BPUM_1976___c 1 ---------------ATGAATGAACCATTCACACATGCGATCCCTATTTT 35
BSNT_03344___ 45 A-AT--------CGAAGCA-GGCCATCAGGCTTATTTTGTCGGAGGCGCA 84
| || |||| || ||..||||.|||||.||||||||.||.|||
BPUM_1976___c 36 ACATACACTGCACGAA-CATGGATATCAAGCTTACTTTGTCGGCGGAGCA 84
BSNT_03344___ 85 GTTCGTGACAG------CTATATGAAACGAACGATCGGAGATGTCGATAT 128
||||.|| .|.||.|.|..||| |||||.|||.|||||||
BPUM_1976___c 85 ----GTGAGAGATGTCCTTTTAGGCAGGGAA--ATCGGCGATATCGATAT 128
BSNT_03344___ 129 CGCGACAGATGCGGCACCTGATCAAGTAGAACGG--------CTGTTTCA 170
.||.||.|||||..|.|||||| |||| .|.|||.|
BPUM_1976___c 129 AGCAACGGATGCAACGCCTGAT--------ACGGTCGAGTCTTTATTTGA 170
BSNT_03344___ 171 GCGGACTGTTGATGTAGGCAAAGAGCACGGGACCATTATTGTGCT--CTG 218
....||.||||||||.|||||||||||.||.||..|.||.|||.| .||
BPUM_1976___c 171 AAAAACAGTTGATGTTGGCAAAGAGCATGGCACGGTCATAGTGTTACATG 220
BSNT_03344___ 219 GGAGGATGAAACCTATGAAGTCACGACATTCCGGACTGAATCTGATTATG 268
...||||| |.||||||.||.|||||.||.||.||||||||.||.||||
BPUM_1976___c 221 ATGGGATG--AGCTATGAGGTGACGACGTTTCGAACTGAATCAGAATATG 268
BSNT_03344___ 269 TTGATTTCAGAAGACCGTCAGAAGTGCAATTTATCTCATCATTAGAA-GA 317
..|||||..|.||.|||..|||||||...||||||.||||.|| ||| ||
BPUM_1976___c 269 AAGATTTTCGCAGGCCGAAAGAAGTGGCGTTTATCACATCCTT-GAAGGA 317
BSNT_03344___ 318 GGATCTAAAACGCAGAGATTTAACGATCAATGCGATGGCCATG-----AC 362
.|||||...|.|.|||||||||||||||||||||||||||||| |
BPUM_1976___c 318 AGATCTTTTAAGAAGAGATTTAACGATCAATGCGATGGCCATGGATATA- 366
BSNT_03344___ 363 AGCGGACGGGAAGGTGCTTGATTATTTTGGCGGCAAGAAAGATATTGATC 412
|..||| ||| .|..||||..||.||||.|||||..|.||||||||.|
BPUM_1976___c 367 AATGGA---GAA-ATCATTGACCATGTTGGGGGCAAACAGGATATTGAGC 412
BSNT_03344___ 413 AGAAAGTGATTCGAACCGTTGGAAAGCCTGAGGATAGATTTCAAGAGGAT 462
.||||...||||.||||||.|||.|.||||.|....|.|||||.||.|||
BPUM_1976___c 413 GGAAACGAATTCAAACCGTAGGAGATCCTGCGTGCCGCTTTCAGGAAGAT 462
BSNT_03344___ 463 GCGCTTCGTATGCTGAGAGCCGTACGCTTTATGAGCCAGCTTGGCTTTAC 512
||||||||||||.|||||||..|.||.|||.|.|||||||||||||||..
BPUM_1976___c 463 GCGCTTCGTATGATGAGAGCGATCCGTTTTTTAAGCCAGCTTGGCTTTGA 512
BSNT_03344___ 513 GCTTTCACCGGAAACAGAAGAAGCCATTGCGAAAGAAAAATCA-CTCCTC 561
|||..|..|.|||||||..|||||.||.|..|||| |.||.|| |||||.
BPUM_1976___c 513 GCTCGCTGCAGAAACAGCTGAAGCAATGGAAAAAG-ATAAGCACCTCCTT 561
BSNT_03344___ 562 TCCCATGTTTCAGTCGAACGAAAAACTATAGAGTTCGAGAAATTGCTGCA 611
.||.|..|.||.||.|||||.|||| |||.| |||||
BPUM_1976___c 562 GCCAACATATCCGTTGAACGCAAAA----AGATT----GAAAT------- 596
BSNT_03344___ 612 GGGAAGAGCTTCT-------CG---------CCAGGCGCTTCAAA-CACT 644
||||.|||||.| || .|.|||| .||||| ..||
BPUM_1976___c 597 -GGAAAAGCTTTTAAAAGGACGTTATTGTGAGCGGGCG-ATCAAAGTGCT 644
BSNT_03344___ 645 CATTCAAACGAGATTGTATGAAGAGCTTCCTGGTTTTTATCATAAACGA- 693
.|||...||.|.|||.||||||||..|.||.|| |.||..|||.||
BPUM_1976___c 645 TATTTCTACCAAATTATATGAAGAATTGCCGGG----TCTCGAAAAGGAT 690
BSNT_03344___ 694 -----GAAAACCTGATTTCAACGAGTGA-GTTTCC--ATTCTTCTCTTTA 735
|.||..||..||||| || .||||| |||.||..||..|
BPUM_1976___c 691 CGTCTGCAAGACTCCTTTCA------GACATTTCCGTATTATTTACTGGA 734
BSNT_03344___ 736 ACATCCCGTG-------AGGAGCTTTGGGCTGCT------CTTTTAATTA 772
|| ||.|| |.||||..||| |.|||
BPUM_1976___c 735 --------TGGGCTGGAAGAAG-TATGGGGGGCTGTCATCCATTT----- 770
BSNT_03344___ 773 ACCTTGGCATAGTCTTGAA-AGACGCGCCG--CTTTTCCTGAAAGGTTGG 819
.||||||.||| .|||| |||.| |||| ||.|||.|.||||..|||
BPUM_1976___c 771 -GCTTGGCTTAG--ATGAAGAGAAG-GCCGTACTCTTCTTAAAAGAATGG 816
BSNT_03344___ 820 AAGCTCCCGGGAAAAGTGATCAAGGAAGCCATTCACA------------- 856
||||| .||||..||||.|||.|.|
BPUM_1976___c 817 AAGCT-------------GTCAACAAAGCTATTGAAAGACGCGGTCGCTA 853
BSNT_03344___ 857 -TTGCCGATACGT---TTGGCCAGAGTCTTG-ACGTAAT-----GACAAT 896
|.|||||||||| ||| || |.|.||| ||..||
BPUM_1976___c 854 TTAGCCGATACGTCGATTG----------TGAATGGAATGCGGAGAAGAT 893
BSNT_03344___ 897 GTACAGAGCTGGGGAAAAAGCAC-TGC-----TCTCAGC--GGCCAAAAT 938
||....||||||.||| ||| ||| ||| ||| | |||||
BPUM_1976___c 894 GTTTGAAGCTGGTGAA----CACGTGCTTTTATCT-AGCTTG---AAAAT 935
BSNT_03344___ 939 ATCGCAGCTTCGGCAAAAC--------------------GAAAAACTGGA 968
..|.||.|| ||||| ||..|.|||||
BPUM_1976___c 936 TACACAACT-----AAAACACGAGCGGCGCATTTTCTTTGACGAGCTGGA 980
BSNT_03344___ 969 TGAAAAGAAACTG--AAGGACATTCAGTACGCTTAT----CAAAACCTGC 1012
.| ||| ||| ||| .||||| || ||||
BPUM_1976___c 981 GG--------CTGCCAAG-------AGT--TCTTATGATGCA----CTGC 1009
BSNT_03344___ 1013 CGATCAAAAGCCTTAAGGATCTTGATATCACGGGTAAGGACTTGCTTGCG 1062
||||.||||..|||.|.||.||||.|.|..|.||.||.||.||..|.||.
BPUM_1976___c 1010 CGATTAAAACGCTTCAAGACCTTGCTGTTTCAGGAAAAGATTTAATGGCC 1059
BSNT_03344___ 1063 CTTCG---AAACCGGCCGGCCGGAAAATGGGTGTCGGAAGAATTACAGCG 1109
.|||| ||| |.|..|.||.||||||.|..|.|||
BPUM_1976___c 1060 TTTCGGCAAAA---GACATCAGGTAAATGGATCGCAGAA----------- 1095
BSNT_03344___ 1110 GATCGAGCAGGCTGTTGTGACAGGGAAG-----CTCTCCAATC------- 1147
||||..|.|.|.||||.| .||| ||...|||||
BPUM_1976___c 1096 ----GAGCTTGATTTGGTGAAA--AAAGCCGTACTGCACAATCATTTGGA 1139
BSNT_03344___ 1148 ------AAAAGAAACACATAGAGGAGTGGCTGAAGACATGCGGTCAAC-- 1189
|||||||.| |||||||||||||||.|...||||||.|||.|
BPUM_1976___c 1140 AAACCGAAAAGAAGC-CATAGAGGAGTGGCTTACCGCATGCGATCAGCAA 1188
BSNT_03344___ 1190 ----------ATTAA 1194
|||||
BPUM_1976___c 1189 TTAGAAAACGATTAA 1203
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