Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home
About
Genes
DNA alignment: BSNT_03341 and BPUM_1974

See Amino acid alignment / Visit BSNT_03341 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:51
# Commandline: needle
#    -asequence dna-align/BSNT_03341___panB.1.24716.seq
#    -bsequence dna-align/BPUM_1974___panB.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03341___panB-BPUM_1974___panB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03341___panB-BPUM_1974___panB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03341___panB
# 2: BPUM_1974___panB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 872
# Identity:     615/872 (70.5%)
# Similarity:   615/872 (70.5%)
# Gaps:          70/872 ( 8.0%)
# Score: 2016.5
# 
#
#=======================================

BSNT_03341___      1 ATGAAAACAAAACTGGATTTTCTAAAAATGAAGGAGTCTGAA-GAACCGA     49
                     |||||.|||||.||.||||||.|.||||||||.|| .|..|| |||||.|
BPUM_1974___p      1 ATGAAGACAAAGCTAGATTTTTTCAAAATGAAAGA-ACAAAACGAACCAA     49

BSNT_03341___     50 TTGTCATGCTGACCGCTTATGATTATCCGGCAGCTAAACTTGCTGAACAA     99
                     ||||.||||||||.||.||.||.|||||..|.||.||.|..||.|||.||
BPUM_1974___p     50 TTGTGATGCTGACAGCATACGACTATCCATCTGCAAAGCAAGCAGAAAAA     99

BSNT_03341___    100 GCGGGAGTTGACATGATTTTAGTCGGTGATTCACTCGGAATGGTCGTCCT    149
                     ||||.|||.||||||||.|||||.|||||||||||.||.|||||.||.||
BPUM_1974___p    100 GCGGAAGTCGACATGATCTTAGTGGGTGATTCACTTGGGATGGTTGTACT    149

BSNT_03341___    150 CGGCCTTGATTCAACTGTGGGTGTGAC-AGTTGCG------GATATGATT    192
                     .||.||.|||||.||..|       || |||..||      ||.|||||.
BPUM_1974___p    150 TGGACTCGATTCGACAAT-------ACAAGTCACGATCGATGACATGATC    192

BSNT_03341___    193 CATCATACAAAAGCCGTTAAAAGGGGTGCGCCGA--ATACCTTTATTGTG    240
                     |||||.||||||||.||.|||||||  ||||..|  |.||.|||||||||
BPUM_1974___p    193 CATCACACAAAAGCAGTGAAAAGGG--GCGCAAAAGACACATTTATTGTG    240

BSNT_03341___    241 ACAGATATGCCGTTTATGTCTTATCACCTGTCCA--AGGAAGATACGCTG    288
                     |||||||||||.|||||||||||||| .|.|.||  | |.|||.||..|.
BPUM_1974___p    241 ACAGATATGCCATTTATGTCTTATCA-TTATTCATTA-GCAGAAACATTA    288

BSNT_03341___    289 AAAAATGCAGC-GGCTATCGTTCAGGAAAGCGGAGCTGACGCACTGAAGC    337
                     |||||.||||| .|| |||.|.||.||||||||.||.||.||..|.||||
BPUM_1974___p    289 AAAAACGCAGCACGC-ATCATGCAAGAAAGCGGTGCGGATGCCTTAAAGC    337

BSNT_03341___    338 TTGAGGGCGGAGAAGGCGTGTTTGAATCCATTCGCGCATTGACGCTTGGA    387
                     |.||.||||||||.||.||.|||||||||||||..||..|.||....||.
BPUM_1974___p    338 TAGAAGGCGGAGATGGTGTATTTGAATCCATTCAAGCTCTCACAAGAGGC    387

BSNT_03341___    388 GGCATTCCAGTAGTCAGTCACTTAGGTTTGACACCGCAGTCAGTCGGCGT    437
                     ||.|||||.||.||||||||.|||||..|.|||||.||||||||.||.||
BPUM_1974___p    388 GGGATTCCTGTCGTCAGTCATTTAGGCCTTACACCTCAGTCAGTTGGAGT    437

BSNT_03341___    438 ACTGGGCGGCTATAAAGTACAGGGCAAAGACGAACAAAGCGCCAAAAAAT    487
                     |||.|||||.||||||||.||.||.||||||.|..||||.||..|.||||
BPUM_1974___p    438 ACTTGGCGGTTATAAAGTGCAAGGAAAAGACCACGAAAGTGCGCAGAAAT    487

BSNT_03341___    488 TAATAGAAGACAGTATAAAATGCGAAGAAGCAGGAGCTATGATG--CTTG    535
                     |.||.||||||||..|.|||||.||.|||||.||.||.||  ||  ||||
BPUM_1974___p    488 TGATTGAAGACAGCTTGAAATGTGAGGAAGCTGGTGCGAT--TGCACTTG    535

BSNT_03341___    536 TGCTGGAATGTGTACCGGCAGAACTCACAGCCAA---AATTGCCGATACG    582
                     |.||.|||||.|||||.|..|||||.|||   ||   ||||.||||.|.|
BPUM_1974___p    536 TCCTTGAATGCGTACCTGGTGAACTGACA---AAACGAATTACCGACATG    582

BSNT_03341___    583 CT-AAGCATACCGGTCATTGGAATCGGGGC-GGGTGTGAAAGCAGACGGA    630
                     || ||| ||.||.||.||.||.||.||.|| |||..|| |.|||||||||
BPUM_1974___p    583 CTGAAG-ATTCCTGTGATCGGGATTGGTGCAGGGGCTG-AGGCAGACGGA    630

BSNT_03341___    631 CAAGTTCTCGTTTATCATGATATTATCGGCCACGGTGTTGAGAGAACACC    680
                     ||||||||.|||||.||||||.|..|.||..||||.||....||||||||
BPUM_1974___p    631 CAAGTTCTTGTTTACCATGATGTGGTAGGATACGGGGTGTCTAGAACACC    680

BSNT_03341___    681 TAAATTTGTAAAGCAATATACGCGTATTGATGAAACCA-TCGAAACAGC-    728
                     |||.|||||.||.|||||..|||..|||||| |.|..| |.|||..||| 
BPUM_1974___p    681 TAAGTTTGTGAAACAATACGCGCAAATTGAT-ACATTATTAGAAGAAGCG    729

BSNT_03341___    729 ---AATCAGCGGATATGTTCAGGATGTA-----AGACATCGTGCTTTCCC    770
                        |.|||    ||||....|.||.|||     |.|||     |.||.||
BPUM_1974___p    730 CTTATTCA----ATATACGAAAGAAGTAAAAGCACACA-----CATTTCC    770

BSNT_03341___    771 TGAACAAAAGCATTCCTTTCAAATGAACCAGA--CAGTGCTGGACGGCTT    818
                     .|||.|.||||||.|.|||||.||.||  |||  .|||.||.||.||.||
BPUM_1974___p    771 AGAAGACAAGCATACATTTCATATCAA--AGAAGAAGTCCTTGATGGTTT    818

BSNT_03341___    819 GTACGGGGG------AAAATAA    834
                     .||.|||||      |||||.|
BPUM_1974___p    819 ATATGGGGGGATCAAAAAATGA    840


#---------------------------------------
#---------------------------------------
Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_03341 and BPUM_1974

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
