Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03339 and BPUM_1973
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:50
# Commandline: needle
# -asequence dna-align/BSNT_03339___panC.1.24716.seq
# -bsequence dna-align/BPUM_1973___panC.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03339___panC-BPUM_1973___panC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03339___panC-BPUM_1973___panC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03339___panC
# 2: BPUM_1973___panC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 921
# Identity: 594/921 (64.5%)
# Similarity: 594/921 (64.5%)
# Gaps: 114/921 (12.4%)
# Score: 1653.5
#
#
#=======================================
BSNT_03339___ 1 ATGAGACAGATT---ACTGATATTACAC-AGCTGAAAGAAGCCATAAAAC 46
|||| |..|| ||..||||| ||| ||.||||.|||...||.||.|
BPUM_1973___p 1 ATGA---ACGTTGTCACCCATATT-CACGAGTTGAAGGAATTGATTAAGC 46
BSNT_03339___ 47 AATATCATTCAG-AGGGCA--AGTCAATCGGATTTGTTCCGACGATGGGG 93
||.|||| || |..||| |.||.||.||.|||||.||.||||||||.
BPUM_1973___p 47 AACATCA---AGAAAAGCAGCATTCCATTGGCTTTGTCCCAACGATGGGC 93
BSNT_03339___ 94 TTTCTGCATGAGGGGCATTTAAC-CTTAGCAGACA-AAGCAAGACAAGAA 141
|||||.|||||.||.|||||.|| ||| || ||.| |||||||..|..||
BPUM_1973___p 94 TTTCTTCATGAAGGACATTTGACGCTT-GC-GAAAGAAGCAAGGGATCAA 141
BSNT_03339___ 142 AACGACGCCGTTATTATGAGTATTTTTGTGAATCCTGCACAATTCGGCCC 191
||.|||...||..|.|||||.||.|||||.||||||...|||||.||.||
BPUM_1973___p 142 AATGACCTTGTAGTCATGAGCATCTTTGTCAATCCTCTGCAATTTGGACC 191
BSNT_03339___ 192 TAATGAAGATTTTGAAGCATATCCGCGCGATATTGAGCGGGATGCAGC-T 240
.||.|||||.||||||.|.|||||.||.|||||.||..|.||| |||| .
BPUM_1973___p 192 GAACGAAGACTTTGAATCCTATCCACGGGATATGGAAAGAGAT-CAGCGC 240
BSNT_03339___ 241 CTTGCAGAAAACGCCGGAGTCGATATTTTATTTACGCCAGATGCTCATGA 290
||||||.||.|.||.|||||.||||||||||||||.||.||||...|.||
BPUM_1973___p 241 CTTGCAAAAGAAGCAGGAGTAGATATTTTATTTACACCTGATGTGAAAGA 290
BSNT_03339___ 291 TATGTATCCCGGTGAAAAGAA-----TGTCACGA------TTCATGTAGA 329
.||||||.| |||.||| ..|||||| ||| ||
BPUM_1973___p 291 AATGTATGC-----AAATGAACCATCGATCACGATGACGGTTC-----GA 330
BSNT_03339___ 330 AAGACGCACAGACGTGTTATGCGGGCGCTCAAGAGAA------GGACATT 373
||| |||||.||.||.||||||||| |.|.|| |||||||
BPUM_1973___p 331 AAG-CGCACGGATGTCTTATGCGGG------AAAAAACGTCCGGGACATT 373
BSNT_03339___ 374 TTGACGGGGTCGCGATCGTACTGACGAAGCT-TTTCAACCTAGTCAAG-- 420
|.|||||.||.|..|..||.||.||.||||| |||| |.||.|| ||
BPUM_1973___p 374 TCGACGGCGTTGTTACGGTGCTTACAAAGCTATTTC-ATCTTGT--AGCA 420
BSNT_03339___ 421 CCGACTCGTGCCTATTTCGGTTTAAAGGATGCGCAGCAGGTAGCTGTTGT 470
||.||...|||.||.||.|||.||||||||||.|||||.||.|||||..|
BPUM_1973___p 421 CCAACAAATGCATACTTTGGTCTAAAGGATGCACAGCAAGTCGCTGTGAT 470
BSNT_03339___ 471 TGATGGGTTAATCAGTGACTTCTTCATGGATATTGAATTGGTTCCTGT-- 518
.||.|.|.|.||||..||.||||||.|.|||.||.|..|.||..|.||
BPUM_1973___p 471 CGACGCGATGATCAAGGATTTCTTCTTTGATCTTCACCTTGTCTCAGTAC 520
BSNT_03339___ 519 CGATACGGTCAGAGAGGAAGACGGCTTAGCTAAAAGCTCTCGCAATGTAT 568
|| ||.||.|||||.||||||||.|||||.|||||.||..|.|||||.|
BPUM_1973___p 521 CG--ACAGTTAGAGAAGAAGACGGTTTAGCGAAAAGTTCAAGAAATGTGT 568
BSNT_03339___ 569 ACTTAACAGCTGAGGAAAGAAAAGAAGCGCCTAAGC--TGTATCGGGCCC 616
||||..|.|.|.|.||||||.|||||||.||| || ||||.||.||.|
BPUM_1973___p 569 ACTTGTCTGATAAAGAAAGACAAGAAGCACCT--GCTTTGTACCGCGCAC 616
BSNT_03339___ 617 TTCAAACAAGTGCGG--AGCTGATCCAAGCCGGTGAAAGAGA------TC 658
|.|||.|||..|.| ||| |||..||...||||||.|.|| ||
BPUM_1973___p 617 -TGAAAAAAGGACAGTCAGC-GATTGAAAATGGTGAACGTGACGTCAGTC 664
BSNT_03339___ 659 CTGAAGC--------GGTGATAAAAGCTGCAAAAGAAATCATTGAAACGA 700
|| |.||.||.||| |.||.||..||.|||||
BPUM_1973___p 665 -----GCATTTATCAGTTGGTAGAAG------AGGATATTCTTCAAACG- 702
BSNT_03339___ 701 CTAGC--GGAACCATAGACTATGTAGAGCTTTATTCCTATCCGGAACTCG 748
||| |||| ||.||.|||.|.||..||||.||||||||.||.||.|
BPUM_1973___p 703 --AGCGGGGAA--ATTGATTATATTGAAATTTACTCCTATCCAGAGCTTG 748
BSNT_03339___ 749 AGCCTGTGAATGAAATT-GCTGGAAAGATGATTCTCGCTGTTGCAGTTGC 797
||||..|..| |.|.|| ||.||..||.|.||..|.||..||||.||...
BPUM_1973___p 749 AGCCGCTTCA-GCAGTTAGCAGGTCAGGTCATCATTGCGATTGCGGTGAA 797
BSNT_03339___ 798 TTTTTCAAAAGCGCGTTTAATAGATAATATCATTATT-GATATTCGAGAA 846
.||.|||...||..|..|.||.||||||.||| |||| .||.|||..|||
BPUM_1973___p 798 ATTCTCACGGGCAAGACTGATTGATAATGTCA-TATTCCATGTTCCTGAA 846
BSNT_03339___ 847 A----TGGAGAGAATATAA-- 861
| ||.|.||.||.||.
BPUM_1973___p 847 AGCGGTGAAAAGCATGTATAG 867
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