Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03338 and BPUM_1972
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:50
# Commandline: needle
# -asequence dna-align/BSNT_03338___panD.1.24716.seq
# -bsequence dna-align/BPUM_1972___panD.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03338___panD-BPUM_1972___panD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03338___panD-BPUM_1972___panD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03338___panD
# 2: BPUM_1972___panD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 390
# Identity: 273/390 (70.0%)
# Similarity: 273/390 (70.0%)
# Gaps: 12/390 ( 3.1%)
# Score: 882.0
#
#
#=======================================
BSNT_03338___ 1 ATGTATCGAACAATGATGAGCGGC-AAGCTTCACAGGGCAACTGTTACGG 49
||||||.||||..|.|||| |..| ||.|||||.|..||.||.||.||.|
BPUM_1972___p 1 ATGTATAGAACCTTTATGA-CTTCTAAACTTCATAAAGCGACGGTAACAG 49
BSNT_03338___ 50 AAGCAAACCTGAACTATGTGGGAAGCATTACAATTGATGAAGATCTCATT 99
||||||||.|..|.|||||.|||||.||.||.|||||.||||||.|..||
BPUM_1972___p 50 AAGCAAACTTACATTATGTTGGAAGTATCACCATTGACGAAGATTTACTT 99
BSNT_03338___ 100 GATGCTGTGGGAATGCTTCCTAATGAAAAAGTACAAATTGTGAATAATAA 149
|||||.|..||.|||.|..|.|||||.||||||||.|||||.||.|||.|
BPUM_1972___p 100 GATGCGGCAGGTATGATGGCAAATGAGAAAGTACAGATTGTCAACAATCA 149
BSNT_03338___ 150 TAATGGAGCACGTCTTGAAACGTATATTATTCCTGGTAAACGGGGAAGCG 199
.|||||.||..|.||||||||||||||||||||.|||.||.|...|||||
BPUM_1972___p 150 CAATGGCGCGAGACTTGAAACGTATATTATTCCGGGTGAAAGAAAAAGCG 199
BSNT_03338___ 200 GCGTCATATGCTTAAACGGTGCAGCCGCACGCCTTGTGCAGGAAGGAGAT 249
|.|||||.||..||||.||.|||||.|||.|..|.||.|||...||.|||
BPUM_1972___p 200 GGGTCATTTGTCTAAATGGCGCAGCAGCAAGATTGGTTCAGCCGGGTGAT 249
BSNT_03338___ 250 AAGGTCATTATTATTTCCTACAAAATGATGTCTGATCAAGAAGCGGCAAG 299
.|.||.||||||||..|.||...||||.|.||.||...|||||| .|||
BPUM_1972___p 250 GAAGTGATTATTATCGCTTATGGAATGCTCTCAGAAGGAGAAGC--AAAG 297
BSNT_03338___ 300 CCACG-----AGCCGAAAGTGGCTGTTCTGAATGATCAAAACAAAATTGA 344
||| | ||.|||||||..||..|.|||.|..||||..|||||||
BPUM_1972___p 298 --ACGCATACA-CCAAAAGTGGTCGTGTTAAATAAAGAAAATCAAATTGA 344
BSNT_03338___ 345 ACAAATGCTGGGGAACGAACCAGCCCGTACAATTTTGTAG 384
|||||||.|.|||.|.||.||.||..|.||.|||||.||.
BPUM_1972___p 345 ACAAATGATTGGGCAAGAGCCTGCGAGAACGATTTTATAA 384
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