Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03335 and BPUM_1969
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:50
# Commandline: needle
# -asequence dna-align/BSNT_03335___ypmB.1.24716.seq
# -bsequence dna-align/BPUM_1969___ypmB.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03335___ypmB-BPUM_1969___ypmB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03335___ypmB-BPUM_1969___ypmB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03335___ypmB
# 2: BPUM_1969___ypmB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 538
# Identity: 339/538 (63.0%)
# Similarity: 339/538 (63.0%)
# Gaps: 104/538 (19.3%)
# Score: 949.5
#
#
#=======================================
BSNT_03335___ 1 ATGAGAAAAAAAGCATTAATATTT-----ACCGTCAT---TTTTGG-TAT 41
||||.|||||.|| ||| |.| |||| ||.||| |.|
BPUM_1969___y 1 ATGAAAAAAATAG--------TTTGGATCATC-TCATCCGTTGTGGCTTT 41
BSNT_03335___ 42 TATTTTTTTAGCAGTACTTCTTGTC----TCGG-----CAAGCATTTAT- 81
|.||| |.|||.|||.| ||.| ||.|.||||||
BPUM_1969___y 42 TGTTT---------TGCTTATTGGCATCATCAGCTTTACATGGATTTATC 82
BSNT_03335___ 82 AAATCAGCCATGGCACAAAAGGAAGAGGGGCACGAAGCAGCAGCTGCTGA 131
|.|| .|||||||..|||||.|||.|.||.||.|||.|.|| |.| |||
BPUM_1969___y 83 AGAT-TGCCATGGGGCAAAAAGAACAAGGTCATGAAACGGC-GAT--TGA 128
BSNT_03335___ 132 ---AGCTAAAAAAGAAACCGATCTCG-CCAATGTTGATCAAGTCGAAACA 177
|||.||||||.||.|.||..||| .||| ||.||.|||||.|||||.
BPUM_1969___y 129 ACGAGCGAAAAAACAAGCAGACATCGTACAA-GTGGAGCAAGTAGAAACC 177
BSNT_03335___ 178 TTTGTCGGAAAAGAAAAATATTATGTTGTAAAGGGAACGGATAA------ 221
||||||||||||||||||.|.|.|.|||| ||||.|||.||
BPUM_1969___y 178 TTTGTCGGAAAAGAAAAACAATTTATTGT----GGAAGGGAAAAACAAAC 223
BSNT_03335___ 222 AAAAGGCACTGCGTTA-----TATGTCTGGGTTCCTGCTGATAAAAAAGC 266
||||.|.| | |||||.|||||.|||||....|||||||.
BPUM_1969___y 224 AAAATGAA-------ACAACCTATGTTTGGGTACCTGCCAGCAAAAAAGA 266
BSNT_03335___ 267 AAAAATTCTCTCAAAAGAAGCGAAAGAGGG---AATCTC---TGAAGACA 310
||||.|..||.|||||...||.|||||.|| ||.||| |.||| ||
BPUM_1969___y 267 AAAAGTGATCGCAAAAAGGGCAAAAGATGGTGTAACCTCAAATCAAG-CA 315
BSNT_03335___ 311 ----AAGCGGCGAAAATCATAAAGGATGAAGGGC-TGGTTTCAAAGCAAA 355
||||.| .||| |||||| ||| | .|||.||.||||.||
BPUM_1969___y 316 GTACAAGCTG-----TTCA-AAAGGA-GAA---CACGGTCTCTAAGCTAA 355
BSNT_03335___ 356 AAGAGGTTCATCTGGCAAGAGAAGGAAACGTCCTGCTTTGGGAAGTGACG 405
|.||.|||||..|.|||||||||||..|.||.||.|||||||||||||||
BPUM_1969___y 356 AGGACGTTCAATTAGCAAGAGAAGGTGATGTACTCCTTTGGGAAGTGACG 405
BSNT_03335___ 406 TACTTA---GACAAAGAAGGGCAATACAGTTTAAGTTATGTGGACTTTAC 452
|||||| || |||.|| .||||||||.||.||.|||||.||.||..|
BPUM_1969___y 406 TACTTAAATGA-AAACAA--TCAATACAGCTTTAGCTATGTCGATTTCTC 452
BSNT_03335___ 453 AACTGGA----AAGATTCTCAAAAATATCACGCCTTAA 486
.||.||| .||| .||||||.|.||.||.||.
BPUM_1969___y 453 GACAGGACACGTAGA----AAAAAATGTAACACCATAG 486
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