Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03328 and BPUM_1965
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:49
# Commandline: needle
# -asequence dna-align/BSNT_03328.1.24716.seq
# -bsequence dna-align/BPUM_1965___ypoC.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03328-BPUM_1965___ypoC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03328-BPUM_1965___ypoC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03328
# 2: BPUM_1965___ypoC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 537
# Identity: 288/537 (53.6%)
# Similarity: 288/537 (53.6%)
# Gaps: 144/537 (26.8%)
# Score: 719.5
#
#
#=======================================
BSNT_03328 0 -------------------------------------------------- 0
BPUM_1965___y 1 ATGAGCGGGGTCGTTGTTTTTTCCTCATATGTCGAAAAACTAAAAGGGAA 50
BSNT_03328 1 -------------------------ATGAAGAAAACCTTGCAGACCAATC 25
||| ||.|.||||..|||.| |||
BPUM_1965___y 51 AAAGATAGAGTTGAAAGGTGAGCGAATG--GACATCCTTAGAGAGC-ATC 97
BSNT_03328 26 C---CGTGTATTTTGATTTCTGCA-CGGAA---TTACAAGGCGATTTGCC 68
| ||..|| ||||.|.| || |.||| |||..||..||..|.||
BPUM_1965___y 98 CACTCGCATA---TGATCTAT-CATCAGAACGTTTAACAGATGAGCTTCC 143
BSNT_03328 69 ATGG--GAGGACAGCGGGAAATACGTTCCGCTTTTATTTGAAGTGTGGGA 116
|||| ||..||||..| |||..|||||..|..|.||.|||.|.|||.|
BPUM_1965___y 144 ATGGCAGAAAACAGAAG--AATTTGTTCCTGTGATGTTCGAACTATGGAA 191
BSNT_03328 117 TGACATCAAAGCATCACTTCTCCCAGTC--TTTCAAACACGAAAATCGAG 164
|||..|.||||.|..|.|.||.|| || |||.|||||.||||.||..|
BPUM_1965___y 192 TGAATTAAAAGAAAAAATGCTTCC--TCGTTTTGAAACAAGAAAGTCTCG 239
BSNT_03328 165 ATGTGACCAAAACGAAATG-TTAAAGGGCATT----GTGTGTTTGCTGGC 209
.|||||..||.|.||.||| |..||||| ||| ||.||.||||.|..
BPUM_1965___y 240 GTGTGAAGAAGATGATATGCTGCAAGGG-ATTGTCAGTATGATTGCGGTG 288
BSNT_03328 210 TTCGTTACATTGGA-CAGCAGGTGAGCCGGTGA----AATCGCTCGATTG 254
|| |||| |||| || .|||.|| |.|| ||.||||.||.||
BPUM_1965___y 289 TT--TTAC--TGGATCA-AAGGGGA----GAGAATTCAAACGCTTGAATG 329
BSNT_03328 255 GCAAGA-ACTGAGGGAGAAATCATATCCCG----CAAAGCCGATTAATTG 299
|.||.| |.|.||..|||.| |||.||||| | ||.||||||||
BPUM_1965___y 330 GGAACATATTAAGCAAGAGA-CATTTCCCGTTGCC----CCTATTAATTG 374
BSNT_03328 300 GGCTGAACGAGTGGAATTTATTCTTCTTAAGCCGACCCAATACCATTGCT 349
|.|.|||||..|.||.||.|||||.||.||.||.||.|||||.||.||||
BPUM_1965___y 375 GACAGAACGTTTAGAGTTCATTCTGCTAAAACCAACTCAATATCACTGCT 424
BSNT_03328 350 TTATTCAGCTTGATGAGCTGAT-TACCGAAATGAAAAAGCATTTTTATAA 398
|||||||.||.||.||||| || .||.|||.|.||||||||.|.|...||
BPUM_1965___y 425 TTATTCAACTAGACGAGCT-ATACACAGAACTAAAAAAGCAGTATGGAAA 473
BSNT_03328 399 ATATCATGC---------GAT------GAATCGATAA 420
||||.|.|| ||| .||.||.|||
BPUM_1965___y 474 ATATGAAGCACTTAAAAAGATTAGACAAAAGCGTTAA 510
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