Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03328 and BPUM_1965

See Amino acid alignment / Visit BSNT_03328 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:49
# Commandline: needle
#    -asequence dna-align/BSNT_03328.1.24716.seq
#    -bsequence dna-align/BPUM_1965___ypoC.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03328-BPUM_1965___ypoC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03328-BPUM_1965___ypoC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03328
# 2: BPUM_1965___ypoC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 537
# Identity:     288/537 (53.6%)
# Similarity:   288/537 (53.6%)
# Gaps:         144/537 (26.8%)
# Score: 719.5
# 
#
#=======================================

BSNT_03328         0 --------------------------------------------------      0
                                                                       
BPUM_1965___y      1 ATGAGCGGGGTCGTTGTTTTTTCCTCATATGTCGAAAAACTAAAAGGGAA     50

BSNT_03328         1 -------------------------ATGAAGAAAACCTTGCAGACCAATC     25
                                              |||  ||.|.||||..|||.| |||
BPUM_1965___y     51 AAAGATAGAGTTGAAAGGTGAGCGAATG--GACATCCTTAGAGAGC-ATC     97

BSNT_03328        26 C---CGTGTATTTTGATTTCTGCA-CGGAA---TTACAAGGCGATTTGCC     68
                     |   ||..||   ||||.|.| || |.|||   |||..||..||..|.||
BPUM_1965___y     98 CACTCGCATA---TGATCTAT-CATCAGAACGTTTAACAGATGAGCTTCC    143

BSNT_03328        69 ATGG--GAGGACAGCGGGAAATACGTTCCGCTTTTATTTGAAGTGTGGGA    116
                     ||||  ||..||||..|  |||..|||||..|..|.||.|||.|.|||.|
BPUM_1965___y    144 ATGGCAGAAAACAGAAG--AATTTGTTCCTGTGATGTTCGAACTATGGAA    191

BSNT_03328       117 TGACATCAAAGCATCACTTCTCCCAGTC--TTTCAAACACGAAAATCGAG    164
                     |||..|.||||.|..|.|.||.||  ||  |||.|||||.||||.||..|
BPUM_1965___y    192 TGAATTAAAAGAAAAAATGCTTCC--TCGTTTTGAAACAAGAAAGTCTCG    239

BSNT_03328       165 ATGTGACCAAAACGAAATG-TTAAAGGGCATT----GTGTGTTTGCTGGC    209
                     .|||||..||.|.||.||| |..||||| |||    ||.||.||||.|..
BPUM_1965___y    240 GTGTGAAGAAGATGATATGCTGCAAGGG-ATTGTCAGTATGATTGCGGTG    288

BSNT_03328       210 TTCGTTACATTGGA-CAGCAGGTGAGCCGGTGA----AATCGCTCGATTG    254
                     ||  ||||  |||| || .|||.||    |.||    ||.||||.||.||
BPUM_1965___y    289 TT--TTAC--TGGATCA-AAGGGGA----GAGAATTCAAACGCTTGAATG    329

BSNT_03328       255 GCAAGA-ACTGAGGGAGAAATCATATCCCG----CAAAGCCGATTAATTG    299
                     |.||.| |.|.||..|||.| |||.|||||    |    ||.||||||||
BPUM_1965___y    330 GGAACATATTAAGCAAGAGA-CATTTCCCGTTGCC----CCTATTAATTG    374

BSNT_03328       300 GGCTGAACGAGTGGAATTTATTCTTCTTAAGCCGACCCAATACCATTGCT    349
                     |.|.|||||..|.||.||.|||||.||.||.||.||.|||||.||.||||
BPUM_1965___y    375 GACAGAACGTTTAGAGTTCATTCTGCTAAAACCAACTCAATATCACTGCT    424

BSNT_03328       350 TTATTCAGCTTGATGAGCTGAT-TACCGAAATGAAAAAGCATTTTTATAA    398
                     |||||||.||.||.||||| || .||.|||.|.||||||||.|.|...||
BPUM_1965___y    425 TTATTCAACTAGACGAGCT-ATACACAGAACTAAAAAAGCAGTATGGAAA    473

BSNT_03328       399 ATATCATGC---------GAT------GAATCGATAA    420
                     ||||.|.||         |||      .||.||.|||
BPUM_1965___y    474 ATATGAAGCACTTAAAAAGATTAGACAAAAGCGTTAA    510


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