Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_03323 and BPUM_1963

See Amino acid alignment / Visit BSNT_03323 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:23:49
# Commandline: needle
#    -asequence dna-align/BSNT_03323___recU.1.24716.seq
#    -bsequence dna-align/BPUM_1963___recU.2.24716.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_03323___recU-BPUM_1963___recU.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03323___recU-BPUM_1963___recU.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03323___recU
# 2: BPUM_1963___recU
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 674
# Identity:     462/674 (68.5%)
# Similarity:   462/674 (68.5%)
# Gaps:         109/674 (16.2%)
# Score: 1620.5
# 
#
#=======================================

BSNT_03323___      1 GTGATTCGGTATCCTAACGGAAAAACATTTCAGCCGAAACATTCGGTTTC     50
                     .|||||||||||||.|||||||||.|.|.||||||.|          |||
BPUM_1963___r      1 ATGATTCGGTATCCAAACGGAAAATCGTATCAGCCCA----------TTC     40

BSNT_03323___     51 ATCC--------CAAAACAGTCAGAAAAG-------GGC----CCCGTCT     81
                     |.||        |||||       |||.|       |||    ||  |||
BPUM_1963___r     41 AACCAATTGGGACAAAA-------AAACGAATTAGCGGCGAATCC--TCT     81

BSNT_03323___     82 TACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAA    131
                     ||.|||||.|||||.|||||.||.||.|.|||||||||||||||.||..|
BPUM_1963___r     82 TATAGTAACCGCGGGATGACTCTTGAGGCTGACTTAAACGAAACCAACCA    131

BSNT_03323___    132 GTATTATCTGACAAACCAAATTGCCGTTATACACAAAAAGCCGACACCTG    181
                     |||.|||.||...|||...||.||.||.||.||.||||||||.||.||.|
BPUM_1963___r    132 GTACTATTTGGTCAACGGGATCGCAGTCATTCATAAAAAGCCTACCCCCG    181

BSNT_03323___    182 TTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAA    231
                     ||||||||||.||.||..||||||||||||||||.||.||.|||||.|||
BPUM_1963___r    182 TTCAAATTGTGAACGTGGATTATCCAAAAAGAAGCGCTGCTGTGATCAAA    231

BSNT_03323___    232 GAAGCTTACTTTAAACAATCATCGACAACAGACTACAATGGGATTTACAA    281
                     |||||.||.||||||||||||||.|||||||||||.|||||..|.||||.
BPUM_1963___r    232 GAAGCCTATTTTAAACAATCATCCACAACAGACTATAATGGAGTGTACAG    281

BSNT_03323___    282 AGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAACAAGACCTCTT    331
                     ||||||.|||||.||||||||.||.||.|||||.||||.||..|||||.|
BPUM_1963___r    282 AGGGCGCTATATCGATTTTGAAGCAAAGGAAACCAAAAGCACCACCTCGT    331

BSNT_03323___    332 TCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGT-    380
                     |.||.||..|.|||||||||||.||||||||.|||||||||||.||||| 
BPUM_1963___r    332 TTCCGCTCAAAAATTTTCATGAACATCAAATTGAGCATATGAAACAGGTT    381

BSNT_03323___    381 --AAAGGCTCAAGACGGTATTTGTTTTGTTATTATATCCGCTTTCGACCA    428
                       ||||   ||||.||||||||||||.||||||||||||||.||.|.|..
BPUM_1963___r    382 GAAAAG---CAAGGCGGTATTTGTTTCGTTATTATATCCGCATTTGGCTC    428

BSNT_03323___    429 GGTATATTTTTTGGAAGCC-------GATAAGCTGTTTTATTTCTGGGA-    470
                     .||.||||.|||    |||       |||   ||.||||..|||||||| 
BPUM_1963___r    429 CGTTTATTATTT----GCCCGCTTCAGAT---CTCTTTTTCTTCTGGGAA    471

BSNT_03323___    471 ---CAGAAAAGAAAAAAACGGCAGAAAATCAATTCGAAAAGATGA---GT    514
                        ||||    ||..|||||||.|.|||||.|||.|.||||||||   ..
BPUM_1963___r    472 CGGCAGA----AACTAAACGGCCGGAAATCCATTAGTAAAGATGAACTAA    517

BSNT_03323___    515 TGGAAGAAACAG----CTTATCCGATTTTTCTTGGATACGCACCCAGAAT    560
                     ||||||   |.|    ||||    ||....||||||||..|.||.|||||
BPUM_1963___r    518 TGGAAG---CCGGTCACTTA----ATGACACTTGGATATTCGCCAAGAAT    560

BSNT_03323___    561 TGATTATATT--AGTATTATTGA-ACAGCTTTATTTTTCGCCATCATCTG    607
                     ||||||||||  ||||  .|.|| ||| |||.||||||||         |
BPUM_1963___r    561 TGATTATATTAAAGTA--GTGGAGACA-CTTCATTTTTCG---------G    598

BSNT_03323___    608 GTGCGAAAGGTTGA----------    621
                     .|  |||||  |||          
BPUM_1963___r    599 AT--GAAAG--TGAGTATCAATAA    618


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