Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03323 and BPUM_1963
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:49
# Commandline: needle
# -asequence dna-align/BSNT_03323___recU.1.24716.seq
# -bsequence dna-align/BPUM_1963___recU.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03323___recU-BPUM_1963___recU.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03323___recU-BPUM_1963___recU.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03323___recU
# 2: BPUM_1963___recU
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 674
# Identity: 462/674 (68.5%)
# Similarity: 462/674 (68.5%)
# Gaps: 109/674 (16.2%)
# Score: 1620.5
#
#
#=======================================
BSNT_03323___ 1 GTGATTCGGTATCCTAACGGAAAAACATTTCAGCCGAAACATTCGGTTTC 50
.|||||||||||||.|||||||||.|.|.||||||.| |||
BPUM_1963___r 1 ATGATTCGGTATCCAAACGGAAAATCGTATCAGCCCA----------TTC 40
BSNT_03323___ 51 ATCC--------CAAAACAGTCAGAAAAG-------GGC----CCCGTCT 81
|.|| ||||| |||.| ||| || |||
BPUM_1963___r 41 AACCAATTGGGACAAAA-------AAACGAATTAGCGGCGAATCC--TCT 81
BSNT_03323___ 82 TACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAA 131
||.|||||.|||||.|||||.||.||.|.|||||||||||||||.||..|
BPUM_1963___r 82 TATAGTAACCGCGGGATGACTCTTGAGGCTGACTTAAACGAAACCAACCA 131
BSNT_03323___ 132 GTATTATCTGACAAACCAAATTGCCGTTATACACAAAAAGCCGACACCTG 181
|||.|||.||...|||...||.||.||.||.||.||||||||.||.||.|
BPUM_1963___r 132 GTACTATTTGGTCAACGGGATCGCAGTCATTCATAAAAAGCCTACCCCCG 181
BSNT_03323___ 182 TTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAA 231
||||||||||.||.||..||||||||||||||||.||.||.|||||.|||
BPUM_1963___r 182 TTCAAATTGTGAACGTGGATTATCCAAAAAGAAGCGCTGCTGTGATCAAA 231
BSNT_03323___ 232 GAAGCTTACTTTAAACAATCATCGACAACAGACTACAATGGGATTTACAA 281
|||||.||.||||||||||||||.|||||||||||.|||||..|.||||.
BPUM_1963___r 232 GAAGCCTATTTTAAACAATCATCCACAACAGACTATAATGGAGTGTACAG 281
BSNT_03323___ 282 AGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAACAAGACCTCTT 331
||||||.|||||.||||||||.||.||.|||||.||||.||..|||||.|
BPUM_1963___r 282 AGGGCGCTATATCGATTTTGAAGCAAAGGAAACCAAAAGCACCACCTCGT 331
BSNT_03323___ 332 TCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGT- 380
|.||.||..|.|||||||||||.||||||||.|||||||||||.|||||
BPUM_1963___r 332 TTCCGCTCAAAAATTTTCATGAACATCAAATTGAGCATATGAAACAGGTT 381
BSNT_03323___ 381 --AAAGGCTCAAGACGGTATTTGTTTTGTTATTATATCCGCTTTCGACCA 428
|||| ||||.||||||||||||.||||||||||||||.||.|.|..
BPUM_1963___r 382 GAAAAG---CAAGGCGGTATTTGTTTCGTTATTATATCCGCATTTGGCTC 428
BSNT_03323___ 429 GGTATATTTTTTGGAAGCC-------GATAAGCTGTTTTATTTCTGGGA- 470
.||.||||.||| ||| ||| ||.||||..||||||||
BPUM_1963___r 429 CGTTTATTATTT----GCCCGCTTCAGAT---CTCTTTTTCTTCTGGGAA 471
BSNT_03323___ 471 ---CAGAAAAGAAAAAAACGGCAGAAAATCAATTCGAAAAGATGA---GT 514
|||| ||..|||||||.|.|||||.|||.|.|||||||| ..
BPUM_1963___r 472 CGGCAGA----AACTAAACGGCCGGAAATCCATTAGTAAAGATGAACTAA 517
BSNT_03323___ 515 TGGAAGAAACAG----CTTATCCGATTTTTCTTGGATACGCACCCAGAAT 560
|||||| |.| |||| ||....||||||||..|.||.|||||
BPUM_1963___r 518 TGGAAG---CCGGTCACTTA----ATGACACTTGGATATTCGCCAAGAAT 560
BSNT_03323___ 561 TGATTATATT--AGTATTATTGA-ACAGCTTTATTTTTCGCCATCATCTG 607
|||||||||| |||| .|.|| ||| |||.|||||||| |
BPUM_1963___r 561 TGATTATATTAAAGTA--GTGGAGACA-CTTCATTTTTCG---------G 598
BSNT_03323___ 608 GTGCGAAAGGTTGA---------- 621
.| ||||| |||
BPUM_1963___r 599 AT--GAAAG--TGAGTATCAATAA 618
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