Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03317 and BPUM_1959
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:49
# Commandline: needle
# -asequence dna-align/BSNT_03317___yppE.1.24716.seq
# -bsequence dna-align/BPUM_1959___yppE.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03317___yppE-BPUM_1959___yppE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03317___yppE-BPUM_1959___yppE.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03317___yppE
# 2: BPUM_1959___yppE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 436
# Identity: 235/436 (53.9%)
# Similarity: 235/436 (53.9%)
# Gaps: 128/436 (29.4%)
# Score: 545.0
#
#
#=======================================
BSNT_03317___ 1 TTGCTATCA-CAAACTTTGCTGGAA-ATGAC--------CGAGCAAAT-G 39
||| .||.| |||||.||.||.||| || || .|||.|.|| |
BPUM_1959___y 1 TTG-GATAATCAAACATTACTTGAACAT-ACACAAAACTTGAGAATATGG 48
BSNT_03317___ 40 ATTGAAGTTGCTGAAAAAGGCG-CTGATCGGTATCAGGAAGGGAAA---- 84
||.|||| ||||| .|||.|.|||.|| .||||||||
BPUM_1959___y 49 ATCGAAG----------AGGCGTATGAGCAGTACCA-AAAGGGAAAGGCT 87
BSNT_03317___ 85 -AACAGTAAT--CATTCTTATGATTTTTTTG-----AGACGATAAAGCCT 126
||.||.||| |.|..|||||||||| |||| ||..||||.
BPUM_1959___y 88 GAAGAGGAATACCCTGTTTATGATTTT----CACACAGAC-ATTCAGCCA 132
BSNT_03317___ 127 GCAGTTGA-----------AGAGAATGATGAACTGG----CTGCT-CGCT 160
||.||||| |||.|||||...|.||| ||||| ||.|
BPUM_1959___y 133 GCCGTTGAGACATTTGATCAGAAAATGAAAGAGTGGCTCACTGCTGCGAT 182
BSNT_03317___ 161 GGGCAGAGGGTGCTCTTGAATTGATAAAAGTCCGCCGGCCAAA-----AT 205
|||.|..|||.|| |.|||.||| ||
BPUM_1959___y 183 ------------CTCGTTTATTCAT---------CTGGCGAAACCTAGAT 211
BSNT_03317___ 206 ATGTGCATAAAGAGCAAATTGAGGCCGTAAAGGATAATTTCCTG-----G 250
||.|.||..||||.||..||||.|||||.||.||.|| || |
BPUM_1959___y 212 ATTTACACGAAGAACAGCTTGAAGCCGTCAAAGAAAA-----TGGGAAAG 256
BSNT_03317___ 251 AATTGGTCCTTCAATCTTATGTT------CATCATATTCA-------TAA 287
||.|.|||||.|||||||||.|| ||.| ||.|| |.|
BPUM_1959___y 257 AAGTTGTCCTGCAATCTTATTTTGGCAAACAGC--ATGCACCCCGTGTGA 304
BSNT_03317___ 288 AAAACGATTCAAGGACATCACTGAGTCAGTCCTTTATACATTGCACGCAG 337
||| ||| |...|||||||||..||||.||..||.||....
BPUM_1959___y 305 AAA---ATT--------TAGTTGAGTCAGTGATTTACACTCTGAACCTTT 343
BSNT_03317___ 338 TAAAGGATGAAATT-GCAAGAGAAGACAGCCGGTAA 372
|||..||.|||||| .||||.| ||||.|.
BPUM_1959___y 344 TAATAGAAGAAATTAACAAGCG----CAGCTGA--- 372
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