Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_03311 and BPUM_1956
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:23:48
# Commandline: needle
# -asequence dna-align/BSNT_03311___ypqE.1.24716.seq
# -bsequence dna-align/BPUM_1956___ypqE.2.24716.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_03311___ypqE-BPUM_1956___ypqE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_03311___ypqE-BPUM_1956___ypqE.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_03311___ypqE
# 2: BPUM_1956___ypqE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 575
# Identity: 374/575 (65.0%)
# Similarity: 374/575 (65.0%)
# Gaps: 85/575 (14.8%)
# Score: 1246.5
#
#
#=======================================
BSNT_03311___ 1 GTGGTGAATGAAGGGATAACGGTTGAAGTGAATGAGAAGGGAGAAAATAC 50
BPUM_1956___y 0 -------------------------------------------------- 0
BSNT_03311___ 51 ATTGCTGAAAAAATTATTCGGAAT-GGGCAAAACTCAGGAAAAGGTGACA 99
||||||||||||||||||||..| |||.||||| ||.||..|.||.|..
BPUM_1956___y 1 -TTGCTGAAAAAATTATTCGGTTTCGGGAAAAAC-CAAGATGATGTAAAG 48
BSNT_03311___ 100 GAAGAGGTTATTTATTCTCCGGCAGACGGTACAG-TAATGGACCTGTCAG 148
|||||..|.|||||||||||.||.||.|| |.|| |||||||..||.|.|
BPUM_1956___y 49 GAAGAAATCATTTATTCTCCAGCTGATGG-AGAGTTAATGGATATGACGG 97
BSNT_03311___ 149 ATGTGCCGGACCCTGTTTTTTCACAGAAAATGATGGGAGAAGGAATAGCG 198
||||.||.||||||||||||||.||.||.|||||||||||.||..||||.
BPUM_1956___y 98 ATGTACCAGACCCTGTTTTTTCTCAAAAGATGATGGGAGACGGCGTAGCA 147
BSNT_03311___ 199 GTGGAACCTTCTAGCGGTGAAATCGTTTCTCCCGCTGAAGGTGAAGTCAT 248
||..||||...|||.||...|||.||.||.||.|..||.||||||.||||
BPUM_1956___y 148 GTCAAACCAAATAGTGGCACAATTGTGTCACCAGTAGAGGGTGAAATCAT 197
BSNT_03311___ 249 TCAGATTTTCCACACCAAACACGCCGTTGGCATTCGGACTCGCTCGGGAA 298
||||.|.|||||.||.|||||.||..||||||||||.||.|.|||.||..
BPUM_1956___y 198 TCAGCTCTTCCATACAAAACATGCAATTGGCATTCGAACACTCTCAGGGC 247
BSNT_03311___ 299 TTGAGCTGTTAATTCATGTCGGGCTGGAGACAGT--CAATATGAACGGAG 346
|||||||..|.||||||.||||.||.||.||||| .|.|| ||.||.|
BPUM_1956___y 248 TTGAGCTTCTGATTCATATCGGACTTGAAACAGTGGGATTA--AATGGTG 295
BSNT_03311___ 347 AAGGATTTACTGCCCACATTAAAGAAGGGGATAAAGTGAAGGTCGGTGAC 396
||||||||...||.|||||.|||||.||.||||||||||||.||||||||
BPUM_1956___y 296 AAGGATTTGAAGCGCACATCAAAGAGGGAGATAAAGTGAAGATCGGTGAC 345
BSNT_03311___ 397 CCGCTGATTACATGTGATTTGGAATTAATAAAAGAAAAAGCGAGC-AGCA 445
||.||.|||||.||||||||.|||.|.||..||||.|||||| || ||||
BPUM_1956___y 346 CCTCTCATTACGTGTGATTTAGAACTGATTGAAGAGAAAGCG-GCAAGCA 394
BSNT_03311___ 446 CAGTCATCCCAATCGTTATAATGAATGGTGA--GGCTGTAG------GAT 487
||||.|..||.||.||.||.||||||||||| .|.|..|| |||
BPUM_1956___y 395 CAGTGACGCCGATTGTCATTATGAATGGTGACTTGATCGAGCAACTCGAT 444
BSNT_03311___ 488 CAATGGTACCGGCAGGCGAAAAGG---CTGCTCGTAAAGGCGA-ATCAAA 533
.|| |.||| ||||| ||| |.|.|||...|| |||.||
BPUM_1956___y 445 AAA--GAACC---------AAAGGGAACTG-TTGAAAAACAGACATCTAA 482
BSNT_03311___ 534 GCTCCTTACAATAAAAGCGAAATAA 558
|||..||||..|.||....||||||
BPUM_1956___y 483 GCTTTTTACCGTTAAGTTAAAATAA 507
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